J7_9SRE_001

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

(4AC)GAAUC*GG*UAGG*(4AC)GAGAG*CAGAC*GC*GGGUAG

Length

31 nucleotides

Bulged bases

9SRE|1|1|G|1199

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|1|4AC|1068
9SRE|1|1|G|1069
9SRE|1|1|A|1070
9SRE|1|1|A|1071
9SRE|1|1|U|1072
9SRE|1|1|C|1073
*
9SRE|1|1|G|1086
9SRE|1|1|G|1087
*
9SRE|1|1|U|1197
9SRE|1|1|A|1198
9SRE|1|1|G|1199
9SRE|1|1|G|1200
*
9SRE|1|1|4AC|1222
9SRE|1|1|G|1223
9SRE|1|1|A|1224
9SRE|1|1|G|1225
9SRE|1|1|A|1226
9SRE|1|1|G|1227
*
9SRE|1|1|C|1238
9SRE|1|1|A|1239
9SRE|1|1|G|1240
9SRE|1|1|A|1241
9SRE|1|1|C|1242
*
9SRE|1|1|G|1418
9SRE|1|1|C|1419
*
9SRE|1|1|G|1444
9SRE|1|1|G|1445
9SRE|1|1|G|1446
9SRE|1|1|U|1447
9SRE|1|1|A|1448
9SRE|1|1|G|1449

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain B6

30S ribosomal protein S24e

Chain BL

Large ribosomal subunit protein uL15

Chain BR

Large ribosomal subunit protein eL21

Chain BY

Large ribosomal subunit protein uL30

Chain Bb

Large ribosomal subunit protein eL32

Chain Bc

Large ribosomal subunit protein eL33