J7_9SS5_001
3D structure
- PDB id
- 9SS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit in rimM-KO with RsfS (+H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 9SS5|1|D2|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SS5|1|D2|C|8
9SS5|1|D2|G|9
9SS5|1|D2|A|10
9SS5|1|D2|C|11
9SS5|1|D2|U|12
9SS5|1|D2|A|13
9SS5|1|D2|A|14
9SS5|1|D2|G|15
*
9SS5|1|D2|U|525
9SS5|1|D2|A|526
9SS5|1|D2|C|527
9SS5|1|D2|A|528
9SS5|1|D2|A|529
9SS5|1|D2|G|530
9SS5|1|D2|C|531
*
9SS5|1|D2|G|2018
9SS5|1|D2|A|2019
9SS5|1|D2|A|2020
9SS5|1|D2|C|2021
9SS5|1|D2|U|2022
9SS5|1|D2|C|2023
*
9SS5|1|D2|G|2040
9SS5|1|D2|U|2041
9SS5|1|D2|A|2042
9SS5|1|D2|C|2043
*
9SS5|1|D2|G|2625
9SS5|1|D2|C|2626
9SS5|1|D2|G|2627
9SS5|1|D2|C|2628
9SS5|1|D2|U|2629
9SS5|1|D2|G|2630
*
9SS5|1|D2|C|2788
9SS5|1|D2|C|2789
*
9SS5|1|D2|G|2894
9SS5|1|D2|G|2895
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain BC
- 50S ribosomal protein L3
- Chain BM
- Large ribosomal subunit protein uL13
- Chain BT
- Large ribosomal subunit protein bL20
- Chain BV
- Large ribosomal subunit protein uL22
Coloring options: