J7_9TKP_001

3D structure

PDB id

9TKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Initiation Complex with extended IF2 bound (70S IC-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9TKP|1|D2|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKP|1|D2|C|8
9TKP|1|D2|G|9
9TKP|1|D2|A|10
9TKP|1|D2|C|11
9TKP|1|D2|U|12
9TKP|1|D2|A|13
9TKP|1|D2|A|14
9TKP|1|D2|G|15
*
9TKP|1|D2|U|525
9TKP|1|D2|A|526
9TKP|1|D2|C|527
9TKP|1|D2|A|528
9TKP|1|D2|A|529
9TKP|1|D2|G|530
9TKP|1|D2|C|531
*
9TKP|1|D2|G|2018
9TKP|1|D2|A|2019
9TKP|1|D2|A|2020
9TKP|1|D2|C|2021
9TKP|1|D2|U|2022
9TKP|1|D2|C|2023
*
9TKP|1|D2|G|2040
9TKP|1|D2|U|2041
9TKP|1|D2|A|2042
9TKP|1|D2|C|2043
*
9TKP|1|D2|G|2625
9TKP|1|D2|C|2626
9TKP|1|D2|G|2627
9TKP|1|D2|C|2628
9TKP|1|D2|U|2629
9TKP|1|D2|G|2630
*
9TKP|1|D2|C|2788
9TKP|1|D2|C|2789
*
9TKP|1|D2|G|2894
9TKP|1|D2|G|2895

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BC

50S ribosomal protein L3

Chain BM

Large ribosomal subunit protein uL13

Chain BT

Large ribosomal subunit protein bL20

Chain BV

Large ribosomal subunit protein uL22