J7_9TT7_001
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9TT7|1|L5|G|1850
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TT7|1|L5|C|1662
9TT7|1|L5|G|1663
9TT7|1|L5|A|1664
9TT7|1|L5|A|1665
9TT7|1|L5|G|1666
9TT7|1|L5|U|1667
*
9TT7|1|L5|A|1680
9TT7|1|L5|G|1681
*
9TT7|1|L5|U|1848
9TT7|1|L5|G|1849
9TT7|1|L5|G|1850
9TT7|1|L5|G|1851
*
9TT7|1|L5|C|1875
9TT7|1|L5|G|1876
9TT7|1|L5|OMC|1877
9TT7|1|L5|U|1878
9TT7|1|L5|G|1879
9TT7|1|L5|C|1880
*
9TT7|1|L5|G|1891
9TT7|1|L5|A|1892
9TT7|1|L5|A|1893
9TT7|1|L5|C|1894
9TT7|1|L5|G|1895
*
9TT7|1|L5|C|2073
9TT7|1|L5|C|2074
*
9TT7|1|L5|G|2268
9TT7|1|L5|A|2269
9TT7|1|L5|G|2270
9TT7|1|L5|U|2271
9TT7|1|L5|A|2272
9TT7|1|L5|G|2273
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- 60S ribosomal protein L29
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- Large ribosomal subunit protein eL33
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