J7_9VVI_001
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 9VVI|1|a|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VVI|1|a|C|8
9VVI|1|a|G|9
9VVI|1|a|A|10
9VVI|1|a|C|11
9VVI|1|a|U|12
9VVI|1|a|A|13
9VVI|1|a|A|14
9VVI|1|a|G|15
*
9VVI|1|a|U|525
9VVI|1|a|A|526
9VVI|1|a|C|527
9VVI|1|a|A|528
9VVI|1|a|A|529
9VVI|1|a|G|530
9VVI|1|a|C|531
*
9VVI|1|a|G|2018
9VVI|1|a|A|2019
9VVI|1|a|A|2020
9VVI|1|a|C|2021
9VVI|1|a|U|2022
9VVI|1|a|C|2023
*
9VVI|1|a|G|2040
9VVI|1|a|U|2041
9VVI|1|a|A|2042
9VVI|1|a|C|2043
*
9VVI|1|a|G|2625
9VVI|1|a|C|2626
9VVI|1|a|G|2627
9VVI|1|a|C|2628
9VVI|1|a|U|2629
9VVI|1|a|G|2630
*
9VVI|1|a|C|2788
9VVI|1|a|C|2789
*
9VVI|1|a|G|2894
9VVI|1|a|G|2895
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- 50S ribosomal protein L22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: