J7_9VXN_001
3D structure
- PDB id
- 9VXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cytosolic ribosome in a rotated state, with multiple neomycin molecules bound, featuring A/P-site and P/E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.51 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9VXN|1|L5|G|1854
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VXN|1|L5|C|1666
9VXN|1|L5|G|1667
9VXN|1|L5|A|1668
9VXN|1|L5|A|1669
9VXN|1|L5|G|1670
9VXN|1|L5|U|1671
*
9VXN|1|L5|A|1684
9VXN|1|L5|G|1685
*
9VXN|1|L5|U|1852
9VXN|1|L5|G|1853
9VXN|1|L5|G|1854
9VXN|1|L5|G|1855
*
9VXN|1|L5|C|1879
9VXN|1|L5|G|1880
9VXN|1|L5|OMC|1881
9VXN|1|L5|U|1882
9VXN|1|L5|G|1883
9VXN|1|L5|C|1884
*
9VXN|1|L5|G|1895
9VXN|1|L5|A|1896
9VXN|1|L5|A|1897
9VXN|1|L5|C|1898
9VXN|1|L5|G|1899
*
9VXN|1|L5|C|2077
9VXN|1|L5|C|2078
*
9VXN|1|L5|G|2278
9VXN|1|L5|A|2279
9VXN|1|L5|G|2280
9VXN|1|L5|U|2281
9VXN|1|L5|A|2282
9VXN|1|L5|G|2283
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LQ
- Large ribosomal subunit protein eL18
- Chain LT
- Large ribosomal subunit protein eL21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- Large ribosomal subunit protein eL32
- Chain Lf
- Large ribosomal subunit protein eL33
Coloring options: