J7_9WW4_001

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

9WW4|1|AA|G|1854

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW4|1|AA|C|1666
9WW4|1|AA|G|1667
9WW4|1|AA|A|1668
9WW4|1|AA|A|1669
9WW4|1|AA|G|1670
9WW4|1|AA|U|1671
*
9WW4|1|AA|A|1684
9WW4|1|AA|G|1685
*
9WW4|1|AA|U|1852
9WW4|1|AA|G|1853
9WW4|1|AA|G|1854
9WW4|1|AA|G|1855
*
9WW4|1|AA|C|1879
9WW4|1|AA|G|1880
9WW4|1|AA|OMC|1881
9WW4|1|AA|U|1882
9WW4|1|AA|G|1883
9WW4|1|AA|C|1884
*
9WW4|1|AA|G|1895
9WW4|1|AA|A|1896
9WW4|1|AA|A|1897
9WW4|1|AA|C|1898
9WW4|1|AA|G|1899
*
9WW4|1|AA|C|2077
9WW4|1|AA|C|2078
*
9WW4|1|AA|G|2278
9WW4|1|AA|A|2279
9WW4|1|AA|G|2280
9WW4|1|AA|U|2281
9WW4|1|AA|A|2282
9WW4|1|AA|G|2283

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AF

Large ribosomal subunit protein uL4

Chain AI

60S ribosomal protein L7

Chain AN

60S ribosomal protein L13

Chain AS

60S ribosomal protein L18

Chain AV

60S ribosomal protein L21

Chain Ac

Large ribosomal subunit protein uL15

Chain Ad

60S ribosomal protein L29

Chain Ag

60S ribosomal protein L32

Chain Ah

60S ribosomal protein L35a