J7_9XWO_002
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 9XWO|1|a|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9XWO|1|a|C|817
9XWO|1|a|G|818
9XWO|1|a|A|819
9XWO|1|a|A|820
9XWO|1|a|A|821
9XWO|1|a|G|822
*
9XWO|1|a|C|835
9XWO|1|a|G|836
9XWO|1|a|C|837
9XWO|1|a|C|838
*
9XWO|1|a|G|940
9XWO|1|a|A|941
9XWO|1|a|G|942
9XWO|1|a|A|943
9XWO|1|a|C|944
9XWO|1|a|A|945
9XWO|1|a|C|946
*
9XWO|1|a|G|971
9XWO|1|a|A|972
9XWO|1|a|A|973
9XWO|1|a|G|974
9XWO|1|a|A|975
9XWO|1|a|G|976
*
9XWO|1|a|C|987
9XWO|1|a|A|988
9XWO|1|a|G|989
9XWO|1|a|A|990
9XWO|1|a|C|991
*
9XWO|1|a|G|1163
9XWO|1|a|C|1164
*
9XWO|1|a|G|1185
9XWO|1|a|G|1186
9XWO|1|a|G|1187
9XWO|1|a|U|1188
9XWO|1|a|A|1189
9XWO|1|a|G|1190
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain k
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- 50S ribosomal protein L21
- Chain y
- Large ribosomal subunit protein uL30
Coloring options: