Loop J7_9YDC

3D structure

PDB id: 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.02 Å

Loop

Sequence: CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length: 31 nucleotides
Bulged bases: 9YDC|1|A|G|1116
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9YDC|1|A|C|949
9YDC|1|A|G|950
9YDC|1|A|A|951
9YDC|1|A|A|952
9YDC|1|A|G|953
9YDC|1|A|U|954
*
9YDC|1|A|A|967
9YDC|1|A|G|968
*
9YDC|1|A|U|1114
9YDC|1|A|G|1115
9YDC|1|A|G|1116
9YDC|1|A|G|1117
*
9YDC|1|A|C|1141
9YDC|1|A|G|1142
9YDC|1|A|A|1143
9YDC|1|A|U|1144
9YDC|1|A|G|1145
9YDC|1|A|C|1146
*
9YDC|1|A|G|1157
9YDC|1|A|A|1158
9YDC|1|A|A|1159
9YDC|1|A|C|1160
9YDC|1|A|G|1161
*
9YDC|1|A|C|1338
9YDC|1|A|C|1339
*
9YDC|1|A|G|1365
9YDC|1|A|A|1366
9YDC|1|A|G|1367
9YDC|1|A|U|1368
9YDC|1|A|A|1369
9YDC|1|A|G|1370

Current chains

Chain A: 25S RNA

Nearby chains

Chain B: 5S ribosomal RNA; 5S rRNA
Chain LF: 60S ribosomal protein L4-A
Chain LI: 60S ribosomal protein L7-A
Chain LN: 60S ribosomal protein L13-A
Chain LS: 60S ribosomal protein L18-A
Chain LV: 60S ribosomal protein L21-A
Chain Lc: 60S ribosomal protein L28
Chain Ld: 60S ribosomal protein L29
Chain Lg: 60S ribosomal protein L32
Chain Lh: 60S ribosomal protein L33-A

J7_9YDC_001