J7_9YPZ_001
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9YPZ|1|5|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|5|C|1666
9YPZ|1|5|A|1667
9YPZ|1|5|A|1668
9YPZ|1|5|A|1669
9YPZ|1|5|G|1670
9YPZ|1|5|U|1671
*
9YPZ|1|5|A|1684
9YPZ|1|5|G|1685
*
9YPZ|1|5|U|1852
9YPZ|1|5|G|1853
9YPZ|1|5|G|1854
9YPZ|1|5|G|1855
*
9YPZ|1|5|C|1879
9YPZ|1|5|G|1880
9YPZ|1|5|C|1881
9YPZ|1|5|U|1882
9YPZ|1|5|G|1883
9YPZ|1|5|C|1884
*
9YPZ|1|5|G|1895
9YPZ|1|5|A|1896
9YPZ|1|5|A|1897
9YPZ|1|5|C|1898
9YPZ|1|5|G|1899
*
9YPZ|1|5|C|2077
9YPZ|1|5|C|2078
*
9YPZ|1|5|G|2278
9YPZ|1|5|A|2279
9YPZ|1|5|G|2280
9YPZ|1|5|U|2281
9YPZ|1|5|A|2282
9YPZ|1|5|G|2283
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain K
- 60S ribosomal protein L7
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- Large ribosomal subunit protein eL29
- Chain e
- Ribosomal protein L32
- Chain f
- eL33
Coloring options: