Loop J8_12DP

3D structure

PDB id: 12DP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 12DP|1|1A|G|530, 12DP|1|1A|C|2021, 12DP|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

12DP|1|1A|A|8
12DP|1|1A|U|9
12DP|1|1A|G|10
12DP|1|1A|G|11
12DP|1|1A|U|12
12DP|1|1A|A|13
12DP|1|1A|A|14
12DP|1|1A|G|15
*
12DP|1|1A|U|525
12DP|1|1A|A|526
12DP|1|1A|C|527
12DP|1|1A|A|528
12DP|1|1A|A|529
12DP|1|1A|G|530
12DP|1|1A|C|531
*
12DP|1|1A|G|2018
12DP|1|1A|A|2019
12DP|1|1A|A|2020
12DP|1|1A|C|2021
12DP|1|1A|U|2022
12DP|1|1A|G|2023
*
12DP|1|1A|C|2040
12DP|1|1A|U|2041
12DP|1|1A|A|2042
12DP|1|1A|C|2043
*
12DP|1|1A|G|2625
12DP|1|1A|C|2626
12DP|1|1A|G|2627
12DP|1|1A|C|2628
12DP|1|1A|A|2629
12DP|1|1A|G|2630
*
12DP|1|1A|C|2788
12DP|1|1A|C|2789
12DP|1|1A|A|2790
12DP|1|1A|C|2791
*
12DP|1|1A|G|2805
12DP|1|1A|G|2807
12DP|1|1A|U|2808
12DP|1|1A|A|2809
12DP|1|1A|A|2810
12DP|1|1A|G|2811
*
12DP|1|1A|C|2889
12DP|1|1A|G|2891
12DP|1|1A|A|2892
12DP|1|1A|G|2893
12DP|1|1A|G|2894
12DP|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_12DP_001