Loop J8_1VVJ

3D structure

PDB id: 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.44 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 1VVJ|1|RA|C|2021, 1VVJ|1|RA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1VVJ|1|RA|A|8
1VVJ|1|RA|U|9
1VVJ|1|RA|G|10
1VVJ|1|RA|G|11
1VVJ|1|RA|U|12
1VVJ|1|RA|A|13
1VVJ|1|RA|A|14
1VVJ|1|RA|G|15
*
1VVJ|1|RA|U|525
1VVJ|1|RA|A|526
1VVJ|1|RA|C|527
1VVJ|1|RA|A|528
1VVJ|1|RA|A|529
1VVJ|1|RA|G|530
1VVJ|1|RA|C|531
*
1VVJ|1|RA|G|2018
1VVJ|1|RA|A|2019
1VVJ|1|RA|A|2020
1VVJ|1|RA|C|2021
1VVJ|1|RA|U|2022
1VVJ|1|RA|G|2023
*
1VVJ|1|RA|C|2040
1VVJ|1|RA|U|2041
1VVJ|1|RA|A|2042
1VVJ|1|RA|C|2043
*
1VVJ|1|RA|G|2625
1VVJ|1|RA|C|2626
1VVJ|1|RA|G|2627
1VVJ|1|RA|C|2628
1VVJ|1|RA|A|2629
1VVJ|1|RA|G|2630
*
1VVJ|1|RA|C|2788
1VVJ|1|RA|C|2789
1VVJ|1|RA|A|2790
1VVJ|1|RA|C|2791
*
1VVJ|1|RA|G|2805
1VVJ|1|RA|G|2807
1VVJ|1|RA|U|2808
1VVJ|1|RA|A|2809
1VVJ|1|RA|A|2810
1VVJ|1|RA|G|2811
*
1VVJ|1|RA|C|2889
1VVJ|1|RA|G|2891
1VVJ|1|RA|A|2892
1VVJ|1|RA|G|2893
1VVJ|1|RA|G|2894
1VVJ|1|RA|U|2895

Current chains

Chain RA: 23S rRNA

Nearby chains

Chain R5: 50S ribosomal protein L33
Chain RE: 50S ribosomal protein L3
Chain RN: 50S ribosomal protein L13
Chain RU: 50S ribosomal protein L20
Chain RW: 50S ribosomal protein L22

J8_1VVJ_001