J8_1VX3_001

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGA*UUUGA*UACA*UGUCCUAAGGCG*CGCUUG*CC*GGGGCCUCACGAUCCUUCU*AGGAGGUGUCAGAAAA

Length

68 nucleotides

Bulged bases

1VX3|1|5|G|3922, 1VX3|1|5|A|4203, 1VX3|1|5|C|4231, 1VX3|1|5|A|4234, 1VX3|1|5|C|4332, 1VX3|1|5|A|4376, 1VX3|1|5|A|4378, 1VX3|1|5|A|4379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|U|3920
1VX3|1|5|U|3921
1VX3|1|5|G|3922
1VX3|1|5|A|3923
*
1VX3|1|5|U|4188
1VX3|1|5|U|4189
1VX3|1|5|U|4190
1VX3|1|5|G|4191
1VX3|1|5|A|4192
*
1VX3|1|5|U|4202
1VX3|1|5|A|4203
1VX3|1|5|C|4204
1VX3|1|5|A|4205
*
1VX3|1|5|U|4227
1VX3|1|5|G|4228
1VX3|1|5|U|4229
1VX3|1|5|C|4230
1VX3|1|5|C|4231
1VX3|1|5|U|4232
1VX3|1|5|A|4233
1VX3|1|5|A|4234
1VX3|1|5|G|4235
1VX3|1|5|G|4236
1VX3|1|5|C|4237
1VX3|1|5|G|4238
*
1VX3|1|5|C|4286
1VX3|1|5|G|4287
1VX3|1|5|C|4288
1VX3|1|5|U|4289
1VX3|1|5|U|4290
1VX3|1|5|G|4291
*
1VX3|1|5|C|4318
1VX3|1|5|C|4319
*
1VX3|1|5|G|4328
1VX3|1|5|G|4329
1VX3|1|5|G|4330
1VX3|1|5|G|4331
1VX3|1|5|C|4332
1VX3|1|5|C|4333
1VX3|1|5|U|4334
1VX3|1|5|C|4335
1VX3|1|5|A|4336
1VX3|1|5|C|4337
1VX3|1|5|G|4338
1VX3|1|5|A|4339
1VX3|1|5|U|4340
1VX3|1|5|C|4341
1VX3|1|5|C|4342
1VX3|1|5|U|4343
1VX3|1|5|U|4344
1VX3|1|5|C|4345
1VX3|1|5|U|4346
*
1VX3|1|5|A|4366
1VX3|1|5|G|4367
1VX3|1|5|G|4368
1VX3|1|5|A|4369
1VX3|1|5|G|4370
1VX3|1|5|G|4371
1VX3|1|5|U|4372
1VX3|1|5|G|4373
1VX3|1|5|U|4374
1VX3|1|5|C|4375
1VX3|1|5|A|4376
1VX3|1|5|G|4377
1VX3|1|5|A|4378
1VX3|1|5|A|4379
1VX3|1|5|A|4380
1VX3|1|5|A|4381

Current chains

Chain 5

28S ribosomal RNA

Nearby chains