J8_1VX3_002
3D structure
- PDB id
- 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGA*UUUGA*UACA*UGUCCUAAGGCGAGCUCAG*CGUGGAGCAGAAGGGCAAAAGCUCGCUUG*CC*GGGGCCUCACGAUCCUUCU*AGGAGGUGUCAGAAAA
- Length
- 98 nucleotides
- Bulged bases
- 1VX3|1|5|G|3922, 1VX3|1|5|A|4203, 1VX3|1|5|C|4231, 1VX3|1|5|A|4280, 1VX3|1|5|A|4376, 1VX3|1|5|A|4378, 1VX3|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX3|1|5|U|3920
1VX3|1|5|U|3921
1VX3|1|5|G|3922
1VX3|1|5|A|3923
*
1VX3|1|5|U|4188
1VX3|1|5|U|4189
1VX3|1|5|U|4190
1VX3|1|5|G|4191
1VX3|1|5|A|4192
*
1VX3|1|5|U|4202
1VX3|1|5|A|4203
1VX3|1|5|C|4204
1VX3|1|5|A|4205
*
1VX3|1|5|U|4227
1VX3|1|5|G|4228
1VX3|1|5|U|4229
1VX3|1|5|C|4230
1VX3|1|5|C|4231
1VX3|1|5|U|4232
1VX3|1|5|A|4233
1VX3|1|5|A|4234
1VX3|1|5|G|4235
1VX3|1|5|G|4236
1VX3|1|5|C|4237
1VX3|1|5|G|4238
1VX3|1|5|A|4239
1VX3|1|5|G|4240
1VX3|1|5|C|4241
1VX3|1|5|U|4242
1VX3|1|5|C|4243
1VX3|1|5|A|4244
1VX3|1|5|G|4245
*
1VX3|1|5|C|4263
1VX3|1|5|G|4264
1VX3|1|5|U|4265
1VX3|1|5|G|4266
1VX3|1|5|G|4267
1VX3|1|5|A|4268
1VX3|1|5|G|4269
1VX3|1|5|C|4270
1VX3|1|5|A|4271
1VX3|1|5|G|4272
1VX3|1|5|A|4273
1VX3|1|5|A|4274
1VX3|1|5|G|4275
1VX3|1|5|G|4276
1VX3|1|5|G|4277
1VX3|1|5|C|4278
1VX3|1|5|A|4279
1VX3|1|5|A|4280
1VX3|1|5|A|4281
1VX3|1|5|A|4282
1VX3|1|5|G|4283
1VX3|1|5|C|4284
1VX3|1|5|U|4285
1VX3|1|5|C|4286
1VX3|1|5|G|4287
1VX3|1|5|C|4288
1VX3|1|5|U|4289
1VX3|1|5|U|4290
1VX3|1|5|G|4291
*
1VX3|1|5|C|4318
1VX3|1|5|C|4319
*
1VX3|1|5|G|4328
1VX3|1|5|G|4329
1VX3|1|5|G|4330
1VX3|1|5|G|4331
1VX3|1|5|C|4332
1VX3|1|5|C|4333
1VX3|1|5|U|4334
1VX3|1|5|C|4335
1VX3|1|5|A|4336
1VX3|1|5|C|4337
1VX3|1|5|G|4338
1VX3|1|5|A|4339
1VX3|1|5|U|4340
1VX3|1|5|C|4341
1VX3|1|5|C|4342
1VX3|1|5|U|4343
1VX3|1|5|U|4344
1VX3|1|5|C|4345
1VX3|1|5|U|4346
*
1VX3|1|5|A|4366
1VX3|1|5|G|4367
1VX3|1|5|G|4368
1VX3|1|5|A|4369
1VX3|1|5|G|4370
1VX3|1|5|G|4371
1VX3|1|5|U|4372
1VX3|1|5|G|4373
1VX3|1|5|U|4374
1VX3|1|5|C|4375
1VX3|1|5|A|4376
1VX3|1|5|G|4377
1VX3|1|5|A|4378
1VX3|1|5|A|4379
1VX3|1|5|A|4380
1VX3|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
Coloring options: