Loop J8_1VY6

3D structure

PDB id: 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 1VY6|1|BA|G|530, 1VY6|1|BA|C|2021, 1VY6|1|BA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

1VY6|1|BA|A|8
1VY6|1|BA|U|9
1VY6|1|BA|G|10
1VY6|1|BA|G|11
1VY6|1|BA|U|12
1VY6|1|BA|A|13
1VY6|1|BA|A|14
1VY6|1|BA|G|15
*
1VY6|1|BA|U|525
1VY6|1|BA|A|526
1VY6|1|BA|C|527
1VY6|1|BA|A|528
1VY6|1|BA|A|529
1VY6|1|BA|G|530
1VY6|1|BA|C|531
*
1VY6|1|BA|G|2018
1VY6|1|BA|A|2019
1VY6|1|BA|A|2020
1VY6|1|BA|C|2021
1VY6|1|BA|U|2022
1VY6|1|BA|G|2023
*
1VY6|1|BA|C|2040
1VY6|1|BA|U|2041
1VY6|1|BA|A|2042
1VY6|1|BA|C|2043
*
1VY6|1|BA|G|2625
1VY6|1|BA|C|2626
1VY6|1|BA|G|2627
1VY6|1|BA|C|2628
1VY6|1|BA|A|2629
1VY6|1|BA|G|2630
*
1VY6|1|BA|C|2788
1VY6|1|BA|C|2789
1VY6|1|BA|A|2790
1VY6|1|BA|C|2791
*
1VY6|1|BA|G|2805
1VY6|1|BA|G|2807
1VY6|1|BA|U|2808
1VY6|1|BA|A|2809
1VY6|1|BA|A|2810
1VY6|1|BA|G|2811
*
1VY6|1|BA|C|2889
1VY6|1|BA|G|2891
1VY6|1|BA|A|2892
1VY6|1|BA|G|2893
1VY6|1|BA|G|2894
1VY6|1|BA|U|2895

Current chains

Chain BA: 23S Ribosomal RNA

Nearby chains

Chain B5: 50S ribosomal protein L32
Chain BE: 50S ribosomal protein L3
Chain BN: 50S ribosomal protein L13
Chain BU: 50S ribosomal protein L20
Chain BW: 50S ribosomal protein L22

J8_1VY6_001