J8_3J71_002
3D structure
- PDB id
- 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGA*UUUGA*UACA*UGUCCUAAGGCGAGCUCAG*CGUGGAGCAGAAGGGCAAAAGCUCGCUUG*CC*GGGGCCUCACGAUCCUUCU*AGGAGGUGUCAGAAAA
- Length
- 98 nucleotides
- Bulged bases
- 3J71|1|5|G|3922, 3J71|1|5|A|4203, 3J71|1|5|C|4231, 3J71|1|5|A|4280, 3J71|1|5|A|4376, 3J71|1|5|A|4378, 3J71|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|U|3920
3J71|1|5|U|3921
3J71|1|5|G|3922
3J71|1|5|A|3923
*
3J71|1|5|U|4188
3J71|1|5|U|4189
3J71|1|5|U|4190
3J71|1|5|G|4191
3J71|1|5|A|4192
*
3J71|1|5|U|4202
3J71|1|5|A|4203
3J71|1|5|C|4204
3J71|1|5|A|4205
*
3J71|1|5|U|4227
3J71|1|5|G|4228
3J71|1|5|U|4229
3J71|1|5|C|4230
3J71|1|5|C|4231
3J71|1|5|U|4232
3J71|1|5|A|4233
3J71|1|5|A|4234
3J71|1|5|G|4235
3J71|1|5|G|4236
3J71|1|5|C|4237
3J71|1|5|G|4238
3J71|1|5|A|4239
3J71|1|5|G|4240
3J71|1|5|C|4241
3J71|1|5|U|4242
3J71|1|5|C|4243
3J71|1|5|A|4244
3J71|1|5|G|4245
*
3J71|1|5|C|4263
3J71|1|5|G|4264
3J71|1|5|U|4265
3J71|1|5|G|4266
3J71|1|5|G|4267
3J71|1|5|A|4268
3J71|1|5|G|4269
3J71|1|5|C|4270
3J71|1|5|A|4271
3J71|1|5|G|4272
3J71|1|5|A|4273
3J71|1|5|A|4274
3J71|1|5|G|4275
3J71|1|5|G|4276
3J71|1|5|G|4277
3J71|1|5|C|4278
3J71|1|5|A|4279
3J71|1|5|A|4280
3J71|1|5|A|4281
3J71|1|5|A|4282
3J71|1|5|G|4283
3J71|1|5|C|4284
3J71|1|5|U|4285
3J71|1|5|C|4286
3J71|1|5|G|4287
3J71|1|5|C|4288
3J71|1|5|U|4289
3J71|1|5|U|4290
3J71|1|5|G|4291
*
3J71|1|5|C|4318
3J71|1|5|C|4319
*
3J71|1|5|G|4328
3J71|1|5|G|4329
3J71|1|5|G|4330
3J71|1|5|G|4331
3J71|1|5|C|4332
3J71|1|5|C|4333
3J71|1|5|U|4334
3J71|1|5|C|4335
3J71|1|5|A|4336
3J71|1|5|C|4337
3J71|1|5|G|4338
3J71|1|5|A|4339
3J71|1|5|U|4340
3J71|1|5|C|4341
3J71|1|5|C|4342
3J71|1|5|U|4343
3J71|1|5|U|4344
3J71|1|5|C|4345
3J71|1|5|U|4346
*
3J71|1|5|A|4366
3J71|1|5|G|4367
3J71|1|5|G|4368
3J71|1|5|A|4369
3J71|1|5|G|4370
3J71|1|5|G|4371
3J71|1|5|U|4372
3J71|1|5|G|4373
3J71|1|5|U|4374
3J71|1|5|C|4375
3J71|1|5|A|4376
3J71|1|5|G|4377
3J71|1|5|A|4378
3J71|1|5|A|4379
3J71|1|5|A|4380
3J71|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain A
- Ribosomal protein uL12
- Chain D
- Ribosomal protein uL18
- Chain I
- Ribosomal protein uL16
- Chain J
- Ribosomal protein uL5
- Chain N
- Ribosomal protein eL15
- Chain Q
- Ribosomal protein eL18
- Chain T
- Ribosomal protein eL21
- Chain a
- Ribosomal protein uL15
- Chain o
- Ribosomal protein eL42
Coloring options: