Loop J8_4LFZ

3D structure

PDB id: 4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.92 Å

Loop

Sequence: GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAGG*CCCACG*CGGUAAG*CGAGGUC
Length: 53 nucleotides
Bulged bases: 4LFZ|1|YA|G|530, 4LFZ|1|YA|C|2021, 4LFZ|1|YA|A|2790, 4LFZ|1|YA|C|2791
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4LFZ|1|YA|G|7
4LFZ|1|YA|A|8
4LFZ|1|YA|U|9
4LFZ|1|YA|G|10
4LFZ|1|YA|G|11
4LFZ|1|YA|U|12
4LFZ|1|YA|A|13
4LFZ|1|YA|A|14
4LFZ|1|YA|G|15
*
4LFZ|1|YA|U|525
4LFZ|1|YA|A|526
4LFZ|1|YA|C|527
4LFZ|1|YA|A|528
4LFZ|1|YA|A|529
4LFZ|1|YA|G|530
4LFZ|1|YA|C|531
*
4LFZ|1|YA|G|2018
4LFZ|1|YA|A|2019
4LFZ|1|YA|A|2020
4LFZ|1|YA|C|2021
4LFZ|1|YA|U|2022
4LFZ|1|YA|G|2023
*
4LFZ|1|YA|C|2040
4LFZ|1|YA|U|2041
4LFZ|1|YA|A|2042
4LFZ|1|YA|C|2043
*
4LFZ|1|YA|G|2625
4LFZ|1|YA|C|2626
4LFZ|1|YA|G|2627
4LFZ|1|YA|C|2628
4LFZ|1|YA|A|2629
4LFZ|1|YA|G|2630
4LFZ|1|YA|G|2631
*
4LFZ|1|YA|C|2787
4LFZ|1|YA|C|2788
4LFZ|1|YA|C|2789
4LFZ|1|YA|A|2790
4LFZ|1|YA|C|2791
4LFZ|1|YA|G|2792
*
4LFZ|1|YA|C|2804
4LFZ|1|YA|G|2805
4LFZ|1|YA|G|2807
4LFZ|1|YA|U|2808
4LFZ|1|YA|A|2809
4LFZ|1|YA|A|2810
4LFZ|1|YA|G|2811
*
4LFZ|1|YA|C|2889
4LFZ|1|YA|G|2891
4LFZ|1|YA|A|2892
4LFZ|1|YA|G|2893
4LFZ|1|YA|G|2894
4LFZ|1|YA|U|2895
4LFZ|1|YA|C|2896

Current chains

Chain YA: 23S rRNA

Nearby chains

Chain Y5: 50S ribosomal protein L32
Chain YE: 50S ribosomal protein L3
Chain YN: 50S ribosomal protein L13
Chain YU: 50S ribosomal protein L20
Chain YW: 50S ribosomal protein L22

J8_4LFZ_002