J8_4V4G_001

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UUUA*UUUG*CG*CGCCCAAAG*UUGACUG*CAGGG*CGGGCUUAGUGAACC*GAUCAACGGAUAAAA

Length

61 nucleotides

Bulged bases

4V4G|1|FB|U|2059, 4V4G|1|FB|A|2265, 4V4G|1|FB|U|2323, 4V4G|1|FB|A|2371, 4V4G|1|FB|C|2403, 4V4G|1|FB|A|2405, 4V4G|1|FB|G|2407, 4V4G|1|FB|G|2408, 4V4G|1|FB|A|2409, 4V4G|1|FB|U|2410, 4V4G|1|FB|A|2413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|FB|U|2057
4V4G|1|FB|U|2058
4V4G|1|FB|U|2059
4V4G|1|FB|A|2060
*
4V4G|1|FB|U|2222
4V4G|1|FB|U|2223
4V4G|1|FB|U|2224
4V4G|1|FB|G|2225
*
4V4G|1|FB|C|2237
4V4G|1|FB|G|2238
*
4V4G|1|FB|C|2260
4V4G|1|FB|G|2261
4V4G|1|FB|C|2262
4V4G|1|FB|C|2263
4V4G|1|FB|C|2264
4V4G|1|FB|A|2265
4V4G|1|FB|A|2266
4V4G|1|FB|A|2267
4V4G|1|FB|G|2268
*
4V4G|1|FB|U|2322
4V4G|1|FB|U|2323
4V4G|1|FB|G|2324
4V4G|1|FB|A|2325
4V4G|1|FB|C|2326
4V4G|1|FB|U|2327
4V4G|1|FB|G|2328
*
4V4G|1|FB|C|2347
4V4G|1|FB|A|2348
4V4G|1|FB|G|2349
4V4G|1|FB|G|2350
4V4G|1|FB|G|2351
*
4V4G|1|FB|C|2360
4V4G|1|FB|G|2361
4V4G|1|FB|G|2362
4V4G|1|FB|G|2363
4V4G|1|FB|C|2364
4V4G|1|FB|U|2365
4V4G|1|FB|U|2366
4V4G|1|FB|A|2367
4V4G|1|FB|G|2368
4V4G|1|FB|U|2369
4V4G|1|FB|G|2370
4V4G|1|FB|A|2371
4V4G|1|FB|A|2372
4V4G|1|FB|C|2373
4V4G|1|FB|C|2374
*
4V4G|1|FB|G|2400
4V4G|1|FB|A|2401
4V4G|1|FB|U|2402
4V4G|1|FB|C|2403
4V4G|1|FB|A|2404
4V4G|1|FB|A|2405
4V4G|1|FB|C|2406
4V4G|1|FB|G|2407
4V4G|1|FB|G|2408
4V4G|1|FB|A|2409
4V4G|1|FB|U|2410
4V4G|1|FB|A|2411
4V4G|1|FB|A|2412
4V4G|1|FB|A|2413
4V4G|1|FB|A|2414

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F1

50S ribosomal protein L31

Chain F3

50S ribosomal protein L33

Chain F5

50S ribosomal protein L35

Chain FD

50S ribosomal protein L2

Chain FM

50S ribosomal protein L15

Chain FX

50S ribosomal protein L27