J8_4V4Z_002

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GCCGAUGAAG*CGAAUG*CG*CACCGCGCUUUUGCGCGGGGGGAAC*GGAGAGGAAAG*CGACU*ACCA*UAAGUAC

Length

70 nucleotides

Bulged bases

4V4Z|1|BA|U|50, 4V4Z|1|BA|U|162, 4V4Z|1|BA|G|173, 4V4Z|1|BA|A|221, 4V4Z|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|G|45
4V4Z|1|BA|C|46
4V4Z|1|BA|C|47
4V4Z|1|BA|G|48
4V4Z|1|BA|A|49
4V4Z|1|BA|U|50
4V4Z|1|BA|G|51
4V4Z|1|BA|A|52
4V4Z|1|BA|A|53
4V4Z|1|BA|G|54
*
4V4Z|1|BA|C|116
4V4Z|1|BA|G|117
4V4Z|1|BA|A|118
4V4Z|1|BA|A|119
4V4Z|1|BA|U|120
4V4Z|1|BA|G|121
*
4V4Z|1|BA|C|130
4V4Z|1|BA|G|131
*
4V4Z|1|BA|C|148
4V4Z|1|BA|A|149
4V4Z|1|BA|C|150
4V4Z|1|BA|C|151
4V4Z|1|BA|G|152
4V4Z|1|BA|C|153
4V4Z|1|BA|G|154
4V4Z|1|BA|C|155
4V4Z|1|BA|U|161
4V4Z|1|BA|U|162
4V4Z|1|BA|U|163
4V4Z|1|BA|U|164
4V4Z|1|BA|G|171
4V4Z|1|BA|C|172
4V4Z|1|BA|G|173
4V4Z|1|BA|C|174
4V4Z|1|BA|G|175
4V4Z|1|BA|G|176
4V4Z|1|BA|G|177
4V4Z|1|BA|G|178
4V4Z|1|BA|G|179
4V4Z|1|BA|G|180
4V4Z|1|BA|A|181
4V4Z|1|BA|A|182
4V4Z|1|BA|C|183
*
4V4Z|1|BA|G|214
4V4Z|1|BA|G|215
4V4Z|1|BA|A|216
4V4Z|1|BA|G|217
4V4Z|1|BA|A|218
4V4Z|1|BA|G|219
4V4Z|1|BA|G|220
4V4Z|1|BA|A|221
4V4Z|1|BA|A|222
4V4Z|1|BA|A|223
4V4Z|1|BA|G|224
*
4V4Z|1|BA|C|231
4V4Z|1|BA|G|232
4V4Z|1|BA|A|233
4V4Z|1|BA|C|234
4V4Z|1|BA|U|235
*
4V4Z|1|BA|A|262
4V4Z|1|BA|C|263
4V4Z|1|BA|C|264
4V4Z|1|BA|A|265
*
4V4Z|1|BA|U|427
4V4Z|1|BA|A|428
4V4Z|1|BA|A|429
4V4Z|1|BA|G|430
4V4Z|1|BA|U|431
4V4Z|1|BA|A|432
4V4Z|1|BA|C|433

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BW

50S RIBOSOMAL PROTEIN L23