Loop J8_4V5D

3D structure

PDB id: 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å

Loop

Sequence: GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGUC
Length: 51 nucleotides
Bulged bases: 4V5D|1|DA|G|530, 4V5D|1|DA|C|2021, 4V5D|1|DA|A|2790, 4V5D|1|DA|U|2895
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5D|1|DA|G|7
4V5D|1|DA|A|8
4V5D|1|DA|U|9
4V5D|1|DA|G|10
4V5D|1|DA|G|11
4V5D|1|DA|U|12
4V5D|1|DA|A|13
4V5D|1|DA|A|14
4V5D|1|DA|G|15
*
4V5D|1|DA|U|525
4V5D|1|DA|A|526
4V5D|1|DA|C|527
4V5D|1|DA|A|528
4V5D|1|DA|A|529
4V5D|1|DA|G|530
4V5D|1|DA|C|531
*
4V5D|1|DA|G|2018
4V5D|1|DA|A|2019
4V5D|1|DA|A|2020
4V5D|1|DA|C|2021
4V5D|1|DA|U|2022
4V5D|1|DA|G|2023
*
4V5D|1|DA|C|2040
4V5D|1|DA|U|2041
4V5D|1|DA|A|2042
4V5D|1|DA|C|2043
*
4V5D|1|DA|G|2625
4V5D|1|DA|C|2626
4V5D|1|DA|G|2627
4V5D|1|DA|C|2628
4V5D|1|DA|A|2629
4V5D|1|DA|G|2630
*
4V5D|1|DA|C|2788
4V5D|1|DA|C|2789
4V5D|1|DA|A|2790
4V5D|1|DA|C|2791
4V5D|1|DA|G|2792
*
4V5D|1|DA|C|2804
4V5D|1|DA|G|2805
4V5D|1|DA|G|2807
4V5D|1|DA|U|2808
4V5D|1|DA|A|2809
4V5D|1|DA|A|2810
4V5D|1|DA|G|2811
*
4V5D|1|DA|C|2889
4V5D|1|DA|G|2891
4V5D|1|DA|A|2892
4V5D|1|DA|G|2893
4V5D|1|DA|G|2894
4V5D|1|DA|U|2895
4V5D|1|DA|C|2896

Current chains

Chain DA: 23S RIBOSOMAL RNA

Nearby chains

Chain D5: 50S RIBOSOMAL PROTEIN L32
Chain DE: 50S RIBOSOMAL PROTEIN L3
Chain DN: 50S RIBOSOMAL PROTEIN L13
Chain DU: 50S RIBOSOMAL PROTEIN L20
Chain DW: 50S RIBOSOMAL PROTEIN L22

J8_4V5D_002