J8_4V5G_001

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGCCGAUGAAG*CGAAUG*CG*CAC*GGGGGAAC*GGAGAGGAAAGAGAAAUCGACUC*GACCAGC*GCUAAGUACU

Length

70 nucleotides

Bulged bases

4V5G|1|BA|U|50, 4V5G|1|BA|A|223, 4V5G|1|BA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5G|1|BA|A|43
4V5G|1|BA|G|44
4V5G|1|BA|C|45
4V5G|1|BA|C|47
4V5G|1|BA|G|48
4V5G|1|BA|A|49
4V5G|1|BA|U|50
4V5G|1|BA|G|51
4V5G|1|BA|A|52
4V5G|1|BA|A|53
4V5G|1|BA|G|54
*
4V5G|1|BA|C|116
4V5G|1|BA|G|117
4V5G|1|BA|A|118
4V5G|1|BA|A|119
4V5G|1|BA|U|120
4V5G|1|BA|G|121
*
4V5G|1|BA|C|130
4V5G|1|BA|G|131
*
4V5G|1|BA|C|148
4V5G|1|BA|A|149
4V5G|1|BA|C|150
*
4V5G|1|BA|G|176
4V5G|1|BA|G|177
4V5G|1|BA|G|178
4V5G|1|BA|G|179
4V5G|1|BA|G|180
4V5G|1|BA|A|181
4V5G|1|BA|A|182
4V5G|1|BA|C|183
*
4V5G|1|BA|G|214
4V5G|1|BA|G|215
4V5G|1|BA|A|216
4V5G|1|BA|G|217
4V5G|1|BA|A|218
4V5G|1|BA|G|219
4V5G|1|BA|G|220
4V5G|1|BA|A|221
4V5G|1|BA|A|222
4V5G|1|BA|A|223
4V5G|1|BA|G|224
4V5G|1|BA|A|225
4V5G|1|BA|G|226
4V5G|1|BA|A|227
4V5G|1|BA|A|228
4V5G|1|BA|A|229
4V5G|1|BA|U|230
4V5G|1|BA|C|231
4V5G|1|BA|G|232
4V5G|1|BA|A|233
4V5G|1|BA|C|234
4V5G|1|BA|U|235
4V5G|1|BA|C|236
*
4V5G|1|BA|G|261
4V5G|1|BA|A|262
4V5G|1|BA|C|263
4V5G|1|BA|C|264
4V5G|1|BA|A|265
4V5G|1|BA|G|266
4V5G|1|BA|C|267
*
4V5G|1|BA|G|425
4V5G|1|BA|C|426
4V5G|1|BA|U|427
4V5G|1|BA|A|428
4V5G|1|BA|A|429
4V5G|1|BA|G|430
4V5G|1|BA|U|431
4V5G|1|BA|A|432
4V5G|1|BA|C|433
4V5G|1|BA|U|434

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BP

50S RIBOSOMAL PROTEIN L15

Chain BX

50S RIBOSOMAL PROTEIN L23