J8_4V7P_002

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGG*CCGGUAAG*CGAGGU

Length

51 nucleotides

Bulged bases

4V7P|1|CA|G|530, 4V7P|1|CA|C|2021, 4V7P|1|CA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|CA|A|8
4V7P|1|CA|U|9
4V7P|1|CA|G|10
4V7P|1|CA|G|11
4V7P|1|CA|U|12
4V7P|1|CA|A|13
4V7P|1|CA|A|14
4V7P|1|CA|G|15
*
4V7P|1|CA|U|525
4V7P|1|CA|A|526
4V7P|1|CA|C|527
4V7P|1|CA|A|528
4V7P|1|CA|A|529
4V7P|1|CA|G|530
4V7P|1|CA|C|531
*
4V7P|1|CA|G|2018
4V7P|1|CA|A|2019
4V7P|1|CA|A|2020
4V7P|1|CA|C|2021
4V7P|1|CA|U|2022
4V7P|1|CA|G|2023
*
4V7P|1|CA|C|2040
4V7P|1|CA|U|2041
4V7P|1|CA|A|2042
4V7P|1|CA|C|2043
*
4V7P|1|CA|G|2625
4V7P|1|CA|C|2626
4V7P|1|CA|G|2627
4V7P|1|CA|C|2628
4V7P|1|CA|A|2629
4V7P|1|CA|G|2630
*
4V7P|1|CA|C|2788
4V7P|1|CA|C|2789
4V7P|1|CA|A|2790
4V7P|1|CA|C|2791
4V7P|1|CA|G|2792
4V7P|1|CA|G|2793
*
4V7P|1|CA|C|2803
4V7P|1|CA|C|2804
4V7P|1|CA|G|2805
4V7P|1|CA|G|2807
4V7P|1|CA|U|2808
4V7P|1|CA|A|2809
4V7P|1|CA|A|2810
4V7P|1|CA|G|2811
*
4V7P|1|CA|C|2889
4V7P|1|CA|G|2891
4V7P|1|CA|A|2892
4V7P|1|CA|G|2893
4V7P|1|CA|G|2894
4V7P|1|CA|U|2895

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CJ

50S ribosomal protein L13

Chain CQ

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22