Loop J8_4V83

3D structure

PDB id: 4V83 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGU
Length: 49 nucleotides
Bulged bases: 4V83|1|BA|G|530, 4V83|1|BA|C|2021, 4V83|1|BA|A|2790, 4V83|1|BA|C|2791
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V83|1|BA|A|8
4V83|1|BA|U|9
4V83|1|BA|G|10
4V83|1|BA|G|11
4V83|1|BA|U|12
4V83|1|BA|A|13
4V83|1|BA|A|14
4V83|1|BA|G|15
*
4V83|1|BA|U|525
4V83|1|BA|A|526
4V83|1|BA|C|527
4V83|1|BA|A|528
4V83|1|BA|A|529
4V83|1|BA|G|530
4V83|1|BA|C|531
*
4V83|1|BA|G|2018
4V83|1|BA|A|2019
4V83|1|BA|A|2020
4V83|1|BA|C|2021
4V83|1|BA|U|2022
4V83|1|BA|G|2023
*
4V83|1|BA|C|2040
4V83|1|BA|U|2041
4V83|1|BA|A|2042
4V83|1|BA|C|2043
*
4V83|1|BA|G|2625
4V83|1|BA|C|2626
4V83|1|BA|G|2627
4V83|1|BA|C|2628
4V83|1|BA|A|2629
4V83|1|BA|G|2630
*
4V83|1|BA|C|2788
4V83|1|BA|C|2789
4V83|1|BA|A|2790
4V83|1|BA|C|2791
4V83|1|BA|G|2792
*
4V83|1|BA|C|2804
4V83|1|BA|G|2805
4V83|1|BA|G|2807
4V83|1|BA|U|2808
4V83|1|BA|A|2809
4V83|1|BA|A|2810
4V83|1|BA|G|2811
*
4V83|1|BA|C|2889
4V83|1|BA|G|2891
4V83|1|BA|A|2892
4V83|1|BA|G|2893
4V83|1|BA|G|2894
4V83|1|BA|U|2895

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain B2: 50S ribosomal protein L32
Chain BD: 50S ribosomal protein L3
Chain BJ: 50S ribosomal protein L13
Chain BQ: 50S ribosomal protein L20
Chain BS: 50S ribosomal protein L22

J8_4V83_001