3D structure

PDB id
4V8H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of HPF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length
47 nucleotides
Bulged bases
4V8H|1|BA|G|530, 4V8H|1|BA|C|2021, 4V8H|1|BA|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8H|1|BA|A|8
4V8H|1|BA|U|9
4V8H|1|BA|G|10
4V8H|1|BA|G|11
4V8H|1|BA|U|12
4V8H|1|BA|A|13
4V8H|1|BA|A|14
4V8H|1|BA|G|15
*
4V8H|1|BA|U|525
4V8H|1|BA|A|526
4V8H|1|BA|C|527
4V8H|1|BA|A|528
4V8H|1|BA|A|529
4V8H|1|BA|G|530
4V8H|1|BA|C|531
*
4V8H|1|BA|G|2018
4V8H|1|BA|A|2019
4V8H|1|BA|A|2020
4V8H|1|BA|C|2021
4V8H|1|BA|U|2022
4V8H|1|BA|G|2023
*
4V8H|1|BA|C|2040
4V8H|1|BA|U|2041
4V8H|1|BA|A|2042
4V8H|1|BA|C|2043
*
4V8H|1|BA|G|2625
4V8H|1|BA|C|2626
4V8H|1|BA|G|2627
4V8H|1|BA|C|2628
4V8H|1|BA|A|2629
4V8H|1|BA|G|2630
*
4V8H|1|BA|C|2788
4V8H|1|BA|C|2789
4V8H|1|BA|A|2790
4V8H|1|BA|C|2791
*
4V8H|1|BA|G|2805
4V8H|1|BA|G|2807
4V8H|1|BA|U|2808
4V8H|1|BA|A|2809
4V8H|1|BA|A|2810
4V8H|1|BA|G|2811
*
4V8H|1|BA|C|2889
4V8H|1|BA|G|2891
4V8H|1|BA|A|2892
4V8H|1|BA|G|2893
4V8H|1|BA|G|2894
4V8H|1|BA|U|2895

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B5
50S Ribosomal Protein L32
Chain BE
50S Ribosomal Protein L3
Chain BN
50S Ribosomal Protein L13
Chain BU
50S Ribosomal Protein L20
Chain BW
50S Ribosomal Protein L22

Coloring options:

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