J8_4V9Q_002

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGG*CCGGUAAG*CGAGGUC

Length

53 nucleotides

Bulged bases

4V9Q|1|CA|G|530, 4V9Q|1|CA|C|2021, 4V9Q|1|CA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|CA|G|7
4V9Q|1|CA|A|8
4V9Q|1|CA|U|9
4V9Q|1|CA|G|10
4V9Q|1|CA|G|11
4V9Q|1|CA|U|12
4V9Q|1|CA|A|13
4V9Q|1|CA|A|14
4V9Q|1|CA|G|15
*
4V9Q|1|CA|U|525
4V9Q|1|CA|A|526
4V9Q|1|CA|C|527
4V9Q|1|CA|A|528
4V9Q|1|CA|A|529
4V9Q|1|CA|G|530
4V9Q|1|CA|C|531
*
4V9Q|1|CA|G|2018
4V9Q|1|CA|A|2019
4V9Q|1|CA|A|2020
4V9Q|1|CA|C|2021
4V9Q|1|CA|U|2022
4V9Q|1|CA|G|2023
*
4V9Q|1|CA|C|2040
4V9Q|1|CA|U|2041
4V9Q|1|CA|A|2042
4V9Q|1|CA|C|2043
*
4V9Q|1|CA|G|2625
4V9Q|1|CA|C|2626
4V9Q|1|CA|G|2627
4V9Q|1|CA|C|2628
4V9Q|1|CA|A|2629
4V9Q|1|CA|G|2630
*
4V9Q|1|CA|C|2788
4V9Q|1|CA|C|2789
4V9Q|1|CA|A|2790
4V9Q|1|CA|C|2791
4V9Q|1|CA|G|2792
4V9Q|1|CA|G|2793
*
4V9Q|1|CA|C|2803
4V9Q|1|CA|C|2804
4V9Q|1|CA|G|2805
4V9Q|1|CA|G|2807
4V9Q|1|CA|U|2808
4V9Q|1|CA|A|2809
4V9Q|1|CA|A|2810
4V9Q|1|CA|G|2811
*
4V9Q|1|CA|C|2889
4V9Q|1|CA|G|2891
4V9Q|1|CA|A|2892
4V9Q|1|CA|G|2893
4V9Q|1|CA|G|2894
4V9Q|1|CA|U|2895
4V9Q|1|CA|C|2896

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CJ

50S ribosomal protein L13

Chain CQ

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22