Loop J8_4W2H

3D structure

PDB id: 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 4W2H|1|BA|G|555, 4W2H|1|BA|C|2043, 4W2H|1|BA|A|2803
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4W2H|1|BA|A|8
4W2H|1|BA|U|9
4W2H|1|BA|G|10
4W2H|1|BA|G|11
4W2H|1|BA|U|12
4W2H|1|BA|A|13
4W2H|1|BA|A|14
4W2H|1|BA|G|15
*
4W2H|1|BA|U|550
4W2H|1|BA|A|551
4W2H|1|BA|C|552
4W2H|1|BA|A|553
4W2H|1|BA|A|554
4W2H|1|BA|G|555
4W2H|1|BA|C|556
*
4W2H|1|BA|G|2040
4W2H|1|BA|A|2041
4W2H|1|BA|A|2042
4W2H|1|BA|C|2043
4W2H|1|BA|U|2044
4W2H|1|BA|G|2045
*
4W2H|1|BA|C|2062
4W2H|1|BA|U|2063
4W2H|1|BA|A|2064
4W2H|1|BA|C|2065
*
4W2H|1|BA|G|2637
4W2H|1|BA|C|2638
4W2H|1|BA|G|2639
4W2H|1|BA|C|2640
4W2H|1|BA|A|2641
4W2H|1|BA|G|2642
*
4W2H|1|BA|C|2801
4W2H|1|BA|C|2802
4W2H|1|BA|A|2803
4W2H|1|BA|C|2804
*
4W2H|1|BA|G|2816
4W2H|1|BA|G|2817
4W2H|1|BA|U|2818
4W2H|1|BA|A|2819
4W2H|1|BA|A|2820
4W2H|1|BA|G|2821
*
4W2H|1|BA|C|2899
4W2H|1|BA|G|2900
4W2H|1|BA|A|2901
4W2H|1|BA|G|2902
4W2H|1|BA|G|2903
4W2H|1|BA|U|2904

Current chains

Chain BA: 23S Ribosomal RNA

Nearby chains

Chain B5: 50S Ribosomal Protein L32
Chain BE: 50S Ribosomal Protein L3
Chain BN: 50S Ribosomal Protein L13
Chain BU: 50S Ribosomal Protein L20
Chain BW: 50S Ribosomal Protein L22

J8_4W2H_001