Loop J8_4W4G

3D structure

PDB id: 4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGU
Length: 49 nucleotides
Bulged bases: 4W4G|1|YA|G|530, 4W4G|1|YA|C|2021, 4W4G|1|YA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4W4G|1|YA|A|8
4W4G|1|YA|U|9
4W4G|1|YA|G|10
4W4G|1|YA|G|11
4W4G|1|YA|U|12
4W4G|1|YA|A|13
4W4G|1|YA|A|14
4W4G|1|YA|G|15
*
4W4G|1|YA|U|525
4W4G|1|YA|A|526
4W4G|1|YA|C|527
4W4G|1|YA|A|528
4W4G|1|YA|A|529
4W4G|1|YA|G|530
4W4G|1|YA|C|531
*
4W4G|1|YA|G|2018
4W4G|1|YA|A|2019
4W4G|1|YA|A|2020
4W4G|1|YA|C|2021
4W4G|1|YA|U|2022
4W4G|1|YA|G|2023
*
4W4G|1|YA|C|2040
4W4G|1|YA|U|2041
4W4G|1|YA|A|2042
4W4G|1|YA|C|2043
*
4W4G|1|YA|G|2625
4W4G|1|YA|C|2626
4W4G|1|YA|G|2627
4W4G|1|YA|C|2628
4W4G|1|YA|A|2629
4W4G|1|YA|G|2630
*
4W4G|1|YA|C|2788
4W4G|1|YA|C|2789
4W4G|1|YA|A|2790
4W4G|1|YA|C|2791
4W4G|1|YA|G|2792
*
4W4G|1|YA|C|2804
4W4G|1|YA|G|2805
4W4G|1|YA|G|2807
4W4G|1|YA|U|2808
4W4G|1|YA|A|2809
4W4G|1|YA|A|2810
4W4G|1|YA|G|2811
*
4W4G|1|YA|C|2889
4W4G|1|YA|G|2891
4W4G|1|YA|A|2892
4W4G|1|YA|G|2893
4W4G|1|YA|G|2894
4W4G|1|YA|U|2895

Current chains

Chain YA: 23S rRNA

Nearby chains

Chain Y5: 50S ribosomal protein L32
Chain YE: 50S ribosomal protein L3
Chain YN: 50S ribosomal protein L13
Chain YU: 50S ribosomal protein L20
Chain YW: 50S ribosomal protein L22

J8_4W4G_001