Loop J8_4WSD

3D structure

PDB id: 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method: X-RAY DIFFRACTION
Resolution: 2.95 Å

Loop

Sequence: CAAGAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGUCUUG
Length: 57 nucleotides
Bulged bases: 4WSD|1|1H|G|530, 4WSD|1|1H|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WSD|1|1H|C|4
4WSD|1|1H|A|5
4WSD|1|1H|A|6
4WSD|1|1H|G|7
4WSD|1|1H|A|8
4WSD|1|1H|U|9
4WSD|1|1H|G|10
4WSD|1|1H|G|11
4WSD|1|1H|U|12
4WSD|1|1H|A|13
4WSD|1|1H|A|14
4WSD|1|1H|G|15
*
4WSD|1|1H|U|525
4WSD|1|1H|A|526
4WSD|1|1H|C|527
4WSD|1|1H|A|528
4WSD|1|1H|A|529
4WSD|1|1H|G|530
4WSD|1|1H|C|531
*
4WSD|1|1H|G|2018
4WSD|1|1H|A|2019
4WSD|1|1H|A|2020
4WSD|1|1H|C|2021
4WSD|1|1H|U|2022
4WSD|1|1H|G|2023
*
4WSD|1|1H|C|2040
4WSD|1|1H|U|2041
4WSD|1|1H|A|2042
4WSD|1|1H|C|2043
*
4WSD|1|1H|G|2625
4WSD|1|1H|C|2626
4WSD|1|1H|G|2627
4WSD|1|1H|C|2628
4WSD|1|1H|A|2629
4WSD|1|1H|G|2630
*
4WSD|1|1H|C|2788
4WSD|1|1H|C|2789
4WSD|1|1H|A|2790
4WSD|1|1H|C|2791
4WSD|1|1H|G|2792
*
4WSD|1|1H|C|2804
4WSD|1|1H|G|2805
4WSD|1|1H|G|2807
4WSD|1|1H|U|2808
4WSD|1|1H|A|2809
4WSD|1|1H|A|2810
4WSD|1|1H|G|2811
*
4WSD|1|1H|C|2889
4WSD|1|1H|G|2891
4WSD|1|1H|A|2892
4WSD|1|1H|G|2893
4WSD|1|1H|G|2894
4WSD|1|1H|U|2895
4WSD|1|1H|C|2896
4WSD|1|1H|U|2897
4WSD|1|1H|U|2898
4WSD|1|1H|G|2899

Current chains

Chain 1H: 23S ribosomal RNA

Nearby chains

Chain 21: 50S ribosomal protein L3
Chain 58: 50S ribosomal protein L13
Chain C8: 50S ribosomal protein L20
Chain E8: 50S ribosomal protein L22
Chain N8: 50S ribosomal protein L32

J8_4WSD_001