Loop J8_4YPB

3D structure

PDB id: 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method: X-RAY DIFFRACTION
Resolution: 3.4 Å

Loop

Sequence: GAUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGUC
Length: 51 nucleotides
Bulged bases: 4YPB|1|RA|G|530, 4YPB|1|RA|C|2021, 4YPB|1|RA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4YPB|1|RA|G|7
4YPB|1|RA|A|8
4YPB|1|RA|U|9
4YPB|1|RA|G|10
4YPB|1|RA|G|11
4YPB|1|RA|U|12
4YPB|1|RA|A|13
4YPB|1|RA|A|14
4YPB|1|RA|G|15
*
4YPB|1|RA|U|525
4YPB|1|RA|A|526
4YPB|1|RA|C|527
4YPB|1|RA|A|528
4YPB|1|RA|A|529
4YPB|1|RA|G|530
4YPB|1|RA|C|531
*
4YPB|1|RA|G|2018
4YPB|1|RA|A|2019
4YPB|1|RA|A|2020
4YPB|1|RA|C|2021
4YPB|1|RA|U|2022
4YPB|1|RA|G|2023
*
4YPB|1|RA|C|2040
4YPB|1|RA|U|2041
4YPB|1|RA|A|2042
4YPB|1|RA|C|2043
*
4YPB|1|RA|G|2625
4YPB|1|RA|C|2626
4YPB|1|RA|G|2627
4YPB|1|RA|C|2628
4YPB|1|RA|A|2629
4YPB|1|RA|G|2630
*
4YPB|1|RA|C|2788
4YPB|1|RA|C|2789
4YPB|1|RA|A|2790
4YPB|1|RA|C|2791
4YPB|1|RA|G|2792
*
4YPB|1|RA|C|2804
4YPB|1|RA|G|2805
4YPB|1|RA|G|2807
4YPB|1|RA|U|2808
4YPB|1|RA|A|2809
4YPB|1|RA|A|2810
4YPB|1|RA|G|2811
*
4YPB|1|RA|C|2889
4YPB|1|RA|G|2891
4YPB|1|RA|A|2892
4YPB|1|RA|G|2893
4YPB|1|RA|G|2894
4YPB|1|RA|U|2895
4YPB|1|RA|C|2896

Current chains

Chain RA: 23S rRNA

Nearby chains

Chain R5: 50S ribosomal protein L32
Chain RE: 50S ribosomal protein L3
Chain RN: 50S ribosomal protein L13
Chain RU: 50S ribosomal protein L20
Chain RW: 50S ribosomal protein L22

J8_4YPB_001