Loop J8_4YZV

3D structure

PDB id: 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACG*CGGUAAG*CGAGGU
Length: 49 nucleotides
Bulged bases: 4YZV|1|YA|G|530, 4YZV|1|YA|C|2021, 4YZV|1|YA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4YZV|1|YA|A|8
4YZV|1|YA|U|9
4YZV|1|YA|G|10
4YZV|1|YA|G|11
4YZV|1|YA|U|12
4YZV|1|YA|A|13
4YZV|1|YA|A|14
4YZV|1|YA|G|15
*
4YZV|1|YA|U|525
4YZV|1|YA|A|526
4YZV|1|YA|C|527
4YZV|1|YA|A|528
4YZV|1|YA|A|529
4YZV|1|YA|G|530
4YZV|1|YA|C|531
*
4YZV|1|YA|G|2018
4YZV|1|YA|A|2019
4YZV|1|YA|A|2020
4YZV|1|YA|C|2021
4YZV|1|YA|U|2022
4YZV|1|YA|G|2023
*
4YZV|1|YA|C|2040
4YZV|1|YA|U|2041
4YZV|1|YA|A|2042
4YZV|1|YA|C|2043
*
4YZV|1|YA|G|2625
4YZV|1|YA|C|2626
4YZV|1|YA|G|2627
4YZV|1|YA|C|2628
4YZV|1|YA|A|2629
4YZV|1|YA|G|2630
*
4YZV|1|YA|C|2788
4YZV|1|YA|C|2789
4YZV|1|YA|A|2790
4YZV|1|YA|C|2791
4YZV|1|YA|G|2792
*
4YZV|1|YA|C|2804
4YZV|1|YA|G|2805
4YZV|1|YA|G|2807
4YZV|1|YA|U|2808
4YZV|1|YA|A|2809
4YZV|1|YA|A|2810
4YZV|1|YA|G|2811
*
4YZV|1|YA|C|2889
4YZV|1|YA|G|2891
4YZV|1|YA|A|2892
4YZV|1|YA|G|2893
4YZV|1|YA|G|2894
4YZV|1|YA|U|2895

Current chains

Chain YA: 23S rRNA

Nearby chains

Chain Y5: 50S ribosomal protein L32
Chain YE: 50S ribosomal protein L3
Chain YN: 50S ribosomal protein L13
Chain YU: 50S ribosomal protein L20
Chain YW: 50S ribosomal protein L22

J8_4YZV_001