Loop J8_4Z8C

3D structure

PDB id: 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
Experimental method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 4Z8C|1|1A|G|554, 4Z8C|1|1A|C|2042, 4Z8C|1|1A|A|2802
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4Z8C|1|1A|A|7
4Z8C|1|1A|U|8
4Z8C|1|1A|G|9
4Z8C|1|1A|G|10
4Z8C|1|1A|U|11
4Z8C|1|1A|A|12
4Z8C|1|1A|A|13
4Z8C|1|1A|G|14
*
4Z8C|1|1A|U|549
4Z8C|1|1A|A|550
4Z8C|1|1A|C|551
4Z8C|1|1A|A|552
4Z8C|1|1A|A|553
4Z8C|1|1A|G|554
4Z8C|1|1A|C|555
*
4Z8C|1|1A|G|2039
4Z8C|1|1A|A|2040
4Z8C|1|1A|A|2041
4Z8C|1|1A|C|2042
4Z8C|1|1A|U|2043
4Z8C|1|1A|G|2044
*
4Z8C|1|1A|C|2061
4Z8C|1|1A|U|2062
4Z8C|1|1A|A|2063
4Z8C|1|1A|C|2064
*
4Z8C|1|1A|G|2636
4Z8C|1|1A|C|2637
4Z8C|1|1A|G|2638
4Z8C|1|1A|C|2639
4Z8C|1|1A|A|2640
4Z8C|1|1A|G|2641
*
4Z8C|1|1A|C|2800
4Z8C|1|1A|C|2801
4Z8C|1|1A|A|2802
4Z8C|1|1A|C|2803
*
4Z8C|1|1A|G|2815
4Z8C|1|1A|G|2816
4Z8C|1|1A|U|2817
4Z8C|1|1A|A|2818
4Z8C|1|1A|A|2819
4Z8C|1|1A|G|2820
*
4Z8C|1|1A|C|2898
4Z8C|1|1A|G|2899
4Z8C|1|1A|A|2900
4Z8C|1|1A|G|2901
4Z8C|1|1A|G|2902
4Z8C|1|1A|U|2903

Current chains

Chain 1A: 23S ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_4Z8C_001