Loop J8_4ZER

3D structure

PDB id: 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 4ZER|1|1A|G|555, 4ZER|1|1A|C|2043, 4ZER|1|1A|A|2803
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4ZER|1|1A|A|8
4ZER|1|1A|U|9
4ZER|1|1A|G|10
4ZER|1|1A|G|11
4ZER|1|1A|U|12
4ZER|1|1A|A|13
4ZER|1|1A|A|14
4ZER|1|1A|G|15
*
4ZER|1|1A|U|550
4ZER|1|1A|A|551
4ZER|1|1A|C|552
4ZER|1|1A|A|553
4ZER|1|1A|A|554
4ZER|1|1A|G|555
4ZER|1|1A|C|556
*
4ZER|1|1A|G|2040
4ZER|1|1A|A|2041
4ZER|1|1A|A|2042
4ZER|1|1A|C|2043
4ZER|1|1A|U|2044
4ZER|1|1A|G|2045
*
4ZER|1|1A|C|2062
4ZER|1|1A|U|2063
4ZER|1|1A|A|2064
4ZER|1|1A|C|2065
*
4ZER|1|1A|G|2637
4ZER|1|1A|C|2638
4ZER|1|1A|G|2639
4ZER|1|1A|C|2640
4ZER|1|1A|A|2641
4ZER|1|1A|G|2642
*
4ZER|1|1A|C|2801
4ZER|1|1A|C|2802
4ZER|1|1A|A|2803
4ZER|1|1A|C|2804
*
4ZER|1|1A|G|2816
4ZER|1|1A|G|2817
4ZER|1|1A|U|2818
4ZER|1|1A|A|2819
4ZER|1|1A|A|2820
4ZER|1|1A|G|2821
*
4ZER|1|1A|C|2899
4ZER|1|1A|G|2900
4ZER|1|1A|A|2901
4ZER|1|1A|G|2902
4ZER|1|1A|G|2903
4ZER|1|1A|U|2904

Current chains

Chain 1A: 23s ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_4ZER_001