3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length
47 nucleotides
Bulged bases
5DOX|1|1A|G|530, 5DOX|1|1A|C|2021, 5DOX|1|1A|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DOX|1|1A|A|8
5DOX|1|1A|U|9
5DOX|1|1A|G|10
5DOX|1|1A|G|11
5DOX|1|1A|U|12
5DOX|1|1A|A|13
5DOX|1|1A|A|14
5DOX|1|1A|G|15
*
5DOX|1|1A|U|525
5DOX|1|1A|A|526
5DOX|1|1A|C|527
5DOX|1|1A|A|528
5DOX|1|1A|A|529
5DOX|1|1A|G|530
5DOX|1|1A|C|531
*
5DOX|1|1A|G|2018
5DOX|1|1A|A|2019
5DOX|1|1A|A|2020
5DOX|1|1A|C|2021
5DOX|1|1A|U|2022
5DOX|1|1A|G|2023
*
5DOX|1|1A|C|2040
5DOX|1|1A|U|2041
5DOX|1|1A|A|2042
5DOX|1|1A|C|2043
*
5DOX|1|1A|G|2625
5DOX|1|1A|C|2626
5DOX|1|1A|G|2627
5DOX|1|1A|C|2628
5DOX|1|1A|A|2629
5DOX|1|1A|G|2630
*
5DOX|1|1A|C|2788
5DOX|1|1A|C|2789
5DOX|1|1A|A|2790
5DOX|1|1A|C|2791
*
5DOX|1|1A|G|2805
5DOX|1|1A|G|2807
5DOX|1|1A|U|2808
5DOX|1|1A|A|2809
5DOX|1|1A|A|2810
5DOX|1|1A|G|2811
*
5DOX|1|1A|C|2889
5DOX|1|1A|G|2891
5DOX|1|1A|A|2892
5DOX|1|1A|G|2893
5DOX|1|1A|G|2894
5DOX|1|1A|U|2895

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13
Chain 1U
50S ribosomal protein L20
Chain 1W
50S ribosomal protein L22

Coloring options:

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