J8_5DOX_001
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
- Length
- 47 nucleotides
- Bulged bases
- 5DOX|1|1A|G|530, 5DOX|1|1A|C|2021, 5DOX|1|1A|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DOX|1|1A|A|8
5DOX|1|1A|U|9
5DOX|1|1A|G|10
5DOX|1|1A|G|11
5DOX|1|1A|U|12
5DOX|1|1A|A|13
5DOX|1|1A|A|14
5DOX|1|1A|G|15
*
5DOX|1|1A|U|525
5DOX|1|1A|A|526
5DOX|1|1A|C|527
5DOX|1|1A|A|528
5DOX|1|1A|A|529
5DOX|1|1A|G|530
5DOX|1|1A|C|531
*
5DOX|1|1A|G|2018
5DOX|1|1A|A|2019
5DOX|1|1A|A|2020
5DOX|1|1A|C|2021
5DOX|1|1A|U|2022
5DOX|1|1A|G|2023
*
5DOX|1|1A|C|2040
5DOX|1|1A|U|2041
5DOX|1|1A|A|2042
5DOX|1|1A|C|2043
*
5DOX|1|1A|G|2625
5DOX|1|1A|C|2626
5DOX|1|1A|G|2627
5DOX|1|1A|C|2628
5DOX|1|1A|A|2629
5DOX|1|1A|G|2630
*
5DOX|1|1A|C|2788
5DOX|1|1A|C|2789
5DOX|1|1A|A|2790
5DOX|1|1A|C|2791
*
5DOX|1|1A|G|2805
5DOX|1|1A|G|2807
5DOX|1|1A|U|2808
5DOX|1|1A|A|2809
5DOX|1|1A|A|2810
5DOX|1|1A|G|2811
*
5DOX|1|1A|C|2889
5DOX|1|1A|G|2891
5DOX|1|1A|A|2892
5DOX|1|1A|G|2893
5DOX|1|1A|G|2894
5DOX|1|1A|U|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
Coloring options: