Loop J8_5HD1

3D structure

PDB id: 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 5HD1|1|1A|G|554, 5HD1|1|1A|C|2042, 5HD1|1|1A|A|2802
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5HD1|1|1A|A|7
5HD1|1|1A|U|8
5HD1|1|1A|G|9
5HD1|1|1A|G|10
5HD1|1|1A|U|11
5HD1|1|1A|A|12
5HD1|1|1A|A|13
5HD1|1|1A|G|14
*
5HD1|1|1A|U|549
5HD1|1|1A|A|550
5HD1|1|1A|C|551
5HD1|1|1A|A|552
5HD1|1|1A|A|553
5HD1|1|1A|G|554
5HD1|1|1A|C|555
*
5HD1|1|1A|G|2039
5HD1|1|1A|A|2040
5HD1|1|1A|A|2041
5HD1|1|1A|C|2042
5HD1|1|1A|U|2043
5HD1|1|1A|G|2044
*
5HD1|1|1A|C|2061
5HD1|1|1A|U|2062
5HD1|1|1A|A|2063
5HD1|1|1A|C|2064
*
5HD1|1|1A|G|2636
5HD1|1|1A|C|2637
5HD1|1|1A|G|2638
5HD1|1|1A|C|2639
5HD1|1|1A|A|2640
5HD1|1|1A|G|2641
*
5HD1|1|1A|C|2800
5HD1|1|1A|C|2801
5HD1|1|1A|A|2802
5HD1|1|1A|C|2803
*
5HD1|1|1A|G|2815
5HD1|1|1A|G|2816
5HD1|1|1A|U|2817
5HD1|1|1A|A|2818
5HD1|1|1A|A|2819
5HD1|1|1A|G|2820
*
5HD1|1|1A|C|2898
5HD1|1|1A|G|2899
5HD1|1|1A|A|2900
5HD1|1|1A|G|2901
5HD1|1|1A|G|2902
5HD1|1|1A|U|2903

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_5HD1_001