Loop J8_5J4D

3D structure

PDB id: 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGG*CCGGUAAG*CGAGGU
Length: 51 nucleotides
Bulged bases: 5J4D|1|B|G|530, 5J4D|1|B|C|2021, 5J4D|1|B|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5J4D|1|B|A|8
5J4D|1|B|U|9
5J4D|1|B|G|10
5J4D|1|B|G|11
5J4D|1|B|U|12
5J4D|1|B|A|13
5J4D|1|B|A|14
5J4D|1|B|G|15
*
5J4D|1|B|U|525
5J4D|1|B|A|526
5J4D|1|B|C|527
5J4D|1|B|A|528
5J4D|1|B|A|529
5J4D|1|B|G|530
5J4D|1|B|C|531
*
5J4D|1|B|G|2018
5J4D|1|B|A|2019
5J4D|1|B|A|2020
5J4D|1|B|C|2021
5J4D|1|B|U|2022
5J4D|1|B|G|2023
*
5J4D|1|B|C|2040
5J4D|1|B|U|2041
5J4D|1|B|A|2042
5J4D|1|B|C|2043
*
5J4D|1|B|G|2625
5J4D|1|B|C|2626
5J4D|1|B|G|2627
5J4D|1|B|C|2628
5J4D|1|B|A|2629
5J4D|1|B|G|2630
*
5J4D|1|B|C|2788
5J4D|1|B|C|2789
5J4D|1|B|A|2790
5J4D|1|B|C|2791
5J4D|1|B|G|2792
5J4D|1|B|G|2793
*
5J4D|1|B|C|2803
5J4D|1|B|C|2804
5J4D|1|B|G|2805
5J4D|1|B|G|2807
5J4D|1|B|U|2808
5J4D|1|B|A|2809
5J4D|1|B|A|2810
5J4D|1|B|G|2811
*
5J4D|1|B|C|2889
5J4D|1|B|G|2891
5J4D|1|B|A|2892
5J4D|1|B|G|2893
5J4D|1|B|G|2894
5J4D|1|B|U|2895

Current chains

Chain B: 25S ribosomal RNA

Nearby chains

Chain CA: 50S ribosomal protein L32
Chain F: 50S ribosomal protein L3
Chain K: 50S ribosomal protein L13
Chain R: 50S ribosomal protein L20
Chain T: 50S ribosomal protein L22

J8_5J4D_001