Loop J8_5V8I

3D structure

PDB id: 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
Description: Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
Experimental method: X-RAY DIFFRACTION
Resolution: 3.25 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 5V8I|1|1A|G|530, 5V8I|1|1A|C|2021, 5V8I|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5V8I|1|1A|A|8
5V8I|1|1A|U|9
5V8I|1|1A|G|10
5V8I|1|1A|G|11
5V8I|1|1A|U|12
5V8I|1|1A|A|13
5V8I|1|1A|A|14
5V8I|1|1A|G|15
*
5V8I|1|1A|U|525
5V8I|1|1A|A|526
5V8I|1|1A|C|527
5V8I|1|1A|A|528
5V8I|1|1A|A|529
5V8I|1|1A|G|530
5V8I|1|1A|C|531
*
5V8I|1|1A|G|2018
5V8I|1|1A|A|2019
5V8I|1|1A|A|2020
5V8I|1|1A|C|2021
5V8I|1|1A|U|2022
5V8I|1|1A|G|2023
*
5V8I|1|1A|C|2040
5V8I|1|1A|U|2041
5V8I|1|1A|A|2042
5V8I|1|1A|C|2043
*
5V8I|1|1A|G|2625
5V8I|1|1A|C|2626
5V8I|1|1A|G|2627
5V8I|1|1A|C|2628
5V8I|1|1A|A|2629
5V8I|1|1A|G|2630
*
5V8I|1|1A|C|2788
5V8I|1|1A|C|2789
5V8I|1|1A|A|2790
5V8I|1|1A|C|2791
*
5V8I|1|1A|G|2805
5V8I|1|1A|G|2807
5V8I|1|1A|U|2808
5V8I|1|1A|A|2809
5V8I|1|1A|A|2810
5V8I|1|1A|G|2811
*
5V8I|1|1A|C|2889
5V8I|1|1A|G|2891
5V8I|1|1A|A|2892
5V8I|1|1A|G|2893
5V8I|1|1A|G|2894
5V8I|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_5V8I_001