Loop J8_5VPO

3D structure

PDB id: 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
Description: The 70S P-site ASL SufA6 complex
Experimental method: X-RAY DIFFRACTION
Resolution: 3.34 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCACGG*CCGGUAAG*CGAGGU
Length: 51 nucleotides
Bulged bases: 5VPO|1|RA|C|2021, 5VPO|1|RA|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5VPO|1|RA|A|8
5VPO|1|RA|U|9
5VPO|1|RA|G|10
5VPO|1|RA|G|11
5VPO|1|RA|U|12
5VPO|1|RA|A|13
5VPO|1|RA|A|14
5VPO|1|RA|G|15
*
5VPO|1|RA|U|525
5VPO|1|RA|A|526
5VPO|1|RA|C|527
5VPO|1|RA|A|528
5VPO|1|RA|A|529
5VPO|1|RA|G|530
5VPO|1|RA|C|531
*
5VPO|1|RA|G|2018
5VPO|1|RA|A|2019
5VPO|1|RA|A|2020
5VPO|1|RA|C|2021
5VPO|1|RA|U|2022
5VPO|1|RA|G|2023
*
5VPO|1|RA|C|2040
5VPO|1|RA|U|2041
5VPO|1|RA|A|2042
5VPO|1|RA|C|2043
*
5VPO|1|RA|G|2625
5VPO|1|RA|C|2626
5VPO|1|RA|G|2627
5VPO|1|RA|C|2628
5VPO|1|RA|A|2629
5VPO|1|RA|G|2630
*
5VPO|1|RA|C|2788
5VPO|1|RA|C|2789
5VPO|1|RA|A|2790
5VPO|1|RA|C|2791
5VPO|1|RA|G|2792
5VPO|1|RA|G|2793
*
5VPO|1|RA|C|2803
5VPO|1|RA|C|2804
5VPO|1|RA|G|2805
5VPO|1|RA|G|2807
5VPO|1|RA|U|2808
5VPO|1|RA|A|2809
5VPO|1|RA|A|2810
5VPO|1|RA|G|2811
*
5VPO|1|RA|C|2889
5VPO|1|RA|G|2891
5VPO|1|RA|A|2892
5VPO|1|RA|G|2893
5VPO|1|RA|G|2894
5VPO|1|RA|U|2895

Current chains

Chain RA: 23S rRNA

Nearby chains

Chain R5: 50S ribosomal protein L32
Chain RE: 50S ribosomal protein L3
Chain RN: 50S ribosomal protein L13
Chain RU: 50S ribosomal protein L20
Chain RW: 50S ribosomal protein L22

J8_5VPO_001