Loop J8_5W4K

3D structure

PDB id: 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 5W4K|1|1A|G|555, 5W4K|1|1A|C|2043, 5W4K|1|1A|A|2803
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5W4K|1|1A|A|8
5W4K|1|1A|U|9
5W4K|1|1A|G|10
5W4K|1|1A|G|11
5W4K|1|1A|U|12
5W4K|1|1A|A|13
5W4K|1|1A|A|14
5W4K|1|1A|G|15
*
5W4K|1|1A|U|550
5W4K|1|1A|A|551
5W4K|1|1A|C|552
5W4K|1|1A|A|553
5W4K|1|1A|A|554
5W4K|1|1A|G|555
5W4K|1|1A|C|556
*
5W4K|1|1A|G|2040
5W4K|1|1A|A|2041
5W4K|1|1A|A|2042
5W4K|1|1A|C|2043
5W4K|1|1A|U|2044
5W4K|1|1A|G|2045
*
5W4K|1|1A|C|2062
5W4K|1|1A|U|2063
5W4K|1|1A|A|2064
5W4K|1|1A|C|2065
*
5W4K|1|1A|G|2637
5W4K|1|1A|C|2638
5W4K|1|1A|G|2639
5W4K|1|1A|C|2640
5W4K|1|1A|A|2641
5W4K|1|1A|G|2642
*
5W4K|1|1A|C|2801
5W4K|1|1A|C|2802
5W4K|1|1A|A|2803
5W4K|1|1A|C|2804
*
5W4K|1|1A|G|2816
5W4K|1|1A|G|2817
5W4K|1|1A|U|2818
5W4K|1|1A|A|2819
5W4K|1|1A|A|2820
5W4K|1|1A|G|2821
*
5W4K|1|1A|C|2899
5W4K|1|1A|G|2900
5W4K|1|1A|A|2901
5W4K|1|1A|G|2902
5W4K|1|1A|G|2903
5W4K|1|1A|U|2904

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_5W4K_001