Loop J8_6DDG

3D structure

PDB id: 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CCA*UAUAAG*CGAAGA
Length: 46 nucleotides
Bulged bases: 6DDG|1|1|G|575, 6DDG|1|1|G|2048
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6DDG|1|1|U|8
6DDG|1|1|U|9
6DDG|1|1|A|10
6DDG|1|1|U|11
6DDG|1|1|U|12
6DDG|1|1|A|13
6DDG|1|1|A|14
6DDG|1|1|G|15
*
6DDG|1|1|U|570
6DDG|1|1|A|571
6DDG|1|1|C|572
6DDG|1|1|A|573
6DDG|1|1|A|574
6DDG|1|1|G|575
6DDG|1|1|U|576
*
6DDG|1|1|A|2045
6DDG|1|1|U|2046
6DDG|1|1|A|2047
6DDG|1|1|G|2048
6DDG|1|1|U|2049
6DDG|1|1|A|2050
*
6DDG|1|1|U|2067
6DDG|1|1|U|2068
6DDG|1|1|A|2069
6DDG|1|1|C|2070
*
6DDG|1|1|G|2652
6DDG|1|1|C|2653
6DDG|1|1|G|2654
6DDG|1|1|U|2655
6DDG|1|1|A|2656
6DDG|1|1|G|2657
*
6DDG|1|1|C|2815
6DDG|1|1|C|2816
6DDG|1|1|A|2817
*
6DDG|1|1|U|2826
6DDG|1|1|A|2827
6DDG|1|1|U|2828
6DDG|1|1|A|2829
6DDG|1|1|A|2830
6DDG|1|1|G|2831
*
6DDG|1|1|C|2909
6DDG|1|1|G|2910
6DDG|1|1|A|2911
6DDG|1|1|A|2912
6DDG|1|1|G|2913
6DDG|1|1|A|2914

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain C: 50S ribosomal protein L20
Chain E: 50S ribosomal protein L22
Chain L: 50S ribosomal protein L3
Chain N: 50S ribosomal protein L32
Chain V: 50S ribosomal protein L13

J8_6DDG_001