Loop J8_6DZP

3D structure

PDB id: 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.42 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6DZP|1|A|U|5
6DZP|1|A|G|6
6DZP|1|A|U|7
6DZP|1|A|U|8
6DZP|1|A|U|9
6DZP|1|A|A|10
6DZP|1|A|A|11
6DZP|1|A|G|12
*
6DZP|1|A|U|612
6DZP|1|A|A|613
6DZP|1|A|C|614
6DZP|1|A|A|615
6DZP|1|A|A|616
6DZP|1|A|U|617
6DZP|1|A|C|618
*
6DZP|1|A|G|2242
6DZP|1|A|C|2243
6DZP|1|A|A|2244
6DZP|1|A|C|2245
6DZP|1|A|U|2246
6DZP|1|A|A|2247
*
6DZP|1|A|U|2264
6DZP|1|A|U|2265
6DZP|1|A|A|2266
6DZP|1|A|C|2267
*
6DZP|1|A|G|2849
6DZP|1|A|C|2850
6DZP|1|A|G|2851
6DZP|1|A|U|2852
6DZP|1|A|C|2853
6DZP|1|A|A|2854
*
6DZP|1|A|U|3012
6DZP|1|A|C|3013
6DZP|1|A|A|3014
6DZP|1|A|C|3015
*
6DZP|1|A|G|3027
6DZP|1|A|A|3028
6DZP|1|A|U|3029
6DZP|1|A|A|3030
6DZP|1|A|A|3031
6DZP|1|A|G|3032
*
6DZP|1|A|C|3110
6DZP|1|A|G|3111
6DZP|1|A|A|3112
6DZP|1|A|A|3113
6DZP|1|A|A|3114
6DZP|1|A|A|3115

Current chains

Chain A: 23S rRNA

Nearby chains

Chain D: 50S ribosomal protein L3
Chain K: 50S ribosomal protein L13
Chain R: 50S ribosomal protein L20
Chain T: 50S ribosomal protein L22
Chain b: 50S ribosomal protein L32

J8_6DZP_001