J8_6GXP_002
3D structure
- PDB id
- 6GXP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCACGAAG*UUGAC*GGU*AGGUCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 57 nucleotides
- Bulged bases
- 6GXP|1|A|U|2076, 6GXP|1|A|A|2288, 6GXP|1|A|A|2388, 6GXP|1|A|U|2390, 6GXP|1|A|U|2423, 6GXP|1|A|G|2428, 6GXP|1|A|A|2430, 6GXP|1|A|U|2431, 6GXP|1|A|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GXP|1|A|U|2074
6GXP|1|A|U|2075
6GXP|1|A|U|2076
6GXP|1|A|A|2077
*
6GXP|1|A|U|2243
6GXP|1|A|U|2244
6GXP|1|A|U|2245
6GXP|1|A|G|2246
*
6GXP|1|A|C|2258
6GXP|1|A|U|2259
*
6GXP|1|A|A|2281
6GXP|1|A|G|2282
6GXP|1|A|C|2283
6GXP|1|A|A|2284
6GXP|1|A|C|2285
6GXP|1|A|G|2286
6GXP|1|A|A|2287
6GXP|1|A|A|2288
6GXP|1|A|G|2289
*
6GXP|1|A|U|2343
6GXP|1|A|U|2344
6GXP|1|A|G|2345
6GXP|1|A|A|2346
6GXP|1|A|C|2347
*
6GXP|1|A|G|2370
6GXP|1|A|G|2371
6GXP|1|A|U|2372
*
6GXP|1|A|A|2381
6GXP|1|A|G|2382
6GXP|1|A|G|2383
6GXP|1|A|U|2384
6GXP|1|A|C|2385
6GXP|1|A|A|2386
6GXP|1|A|U|2387
6GXP|1|A|A|2388
6GXP|1|A|G|2389
6GXP|1|A|U|2390
6GXP|1|A|G|2391
6GXP|1|A|A|2392
6GXP|1|A|U|2393
6GXP|1|A|C|2394
6GXP|1|A|C|2395
*
6GXP|1|A|G|2421
6GXP|1|A|C|2422
6GXP|1|A|U|2423
6GXP|1|A|C|2424
6GXP|1|A|A|2425
6GXP|1|A|A|2426
6GXP|1|A|C|2427
6GXP|1|A|G|2428
6GXP|1|A|G|2429
6GXP|1|A|A|2430
6GXP|1|A|U|2431
6GXP|1|A|A|2432
6GXP|1|A|A|2433
6GXP|1|A|A|2434
6GXP|1|A|A|2435
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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