Loop J8_6N9E

3D structure

PDB id: 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 6N9E|1|1A|G|555, 6N9E|1|1A|C|2043, 6N9E|1|1A|A|2803
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6N9E|1|1A|A|8
6N9E|1|1A|U|9
6N9E|1|1A|G|10
6N9E|1|1A|G|11
6N9E|1|1A|U|12
6N9E|1|1A|A|13
6N9E|1|1A|A|14
6N9E|1|1A|G|15
*
6N9E|1|1A|U|550
6N9E|1|1A|A|551
6N9E|1|1A|C|552
6N9E|1|1A|A|553
6N9E|1|1A|A|554
6N9E|1|1A|G|555
6N9E|1|1A|C|556
*
6N9E|1|1A|G|2040
6N9E|1|1A|A|2041
6N9E|1|1A|A|2042
6N9E|1|1A|C|2043
6N9E|1|1A|U|2044
6N9E|1|1A|G|2045
*
6N9E|1|1A|C|2062
6N9E|1|1A|U|2063
6N9E|1|1A|A|2064
6N9E|1|1A|C|2065
*
6N9E|1|1A|G|2637
6N9E|1|1A|C|2638
6N9E|1|1A|G|2639
6N9E|1|1A|C|2640
6N9E|1|1A|A|2641
6N9E|1|1A|G|2642
*
6N9E|1|1A|C|2801
6N9E|1|1A|C|2802
6N9E|1|1A|A|2803
6N9E|1|1A|C|2804
*
6N9E|1|1A|G|2816
6N9E|1|1A|G|2817
6N9E|1|1A|U|2818
6N9E|1|1A|A|2819
6N9E|1|1A|A|2820
6N9E|1|1A|G|2821
*
6N9E|1|1A|C|2899
6N9E|1|1A|G|2900
6N9E|1|1A|A|2901
6N9E|1|1A|G|2902
6N9E|1|1A|G|2903
6N9E|1|1A|U|2904

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S Ribosomal Protein L3
Chain 1N: 50S Ribosomal Protein L13
Chain 1U: 50S Ribosomal Protein L20
Chain 1W: 50S Ribosomal Protein L22

J8_6N9E_001