Loop J8_6O8X

3D structure

PDB id: 6O8X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.68 Å

Loop

Sequence: UGAAUAAG*UACAACA*UUAGUA*UUAC*GCGUUG*CCAU*AAGUAAG*CGAGGA
Length: 48 nucleotides
Bulged bases: 6O8X|1|A|U|13, 6O8X|1|A|C|569, 6O8X|1|A|G|2035, 6O8X|1|A|A|2804
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6O8X|1|A|U|9
6O8X|1|A|G|10
6O8X|1|A|A|11
6O8X|1|A|A|12
6O8X|1|A|U|13
6O8X|1|A|A|14
6O8X|1|A|A|15
6O8X|1|A|G|16
*
6O8X|1|A|U|564
6O8X|1|A|A|565
6O8X|1|A|C|566
6O8X|1|A|A|567
6O8X|1|A|A|568
6O8X|1|A|C|569
6O8X|1|A|A|570
*
6O8X|1|A|U|2032
6O8X|1|A|U|2033
6O8X|1|A|A|2034
6O8X|1|A|G|2035
6O8X|1|A|U|2036
6O8X|1|A|A|2037
*
6O8X|1|A|U|2054
6O8X|1|A|U|2055
6O8X|1|A|A|2056
6O8X|1|A|C|2057
*
6O8X|1|A|G|2639
6O8X|1|A|C|2640
6O8X|1|A|G|2641
6O8X|1|A|U|2642
6O8X|1|A|U|2643
6O8X|1|A|G|2644
*
6O8X|1|A|C|2802
6O8X|1|A|C|2803
6O8X|1|A|A|2804
6O8X|1|A|U|2805
*
6O8X|1|A|A|2816
6O8X|1|A|A|2817
6O8X|1|A|G|2818
6O8X|1|A|U|2819
6O8X|1|A|A|2820
6O8X|1|A|A|2821
6O8X|1|A|G|2822
*
6O8X|1|A|C|2900
6O8X|1|A|G|2901
6O8X|1|A|A|2902
6O8X|1|A|G|2903
6O8X|1|A|G|2904
6O8X|1|A|A|2905

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 2: 50S ribosomal protein L32
Chain D: 50S ribosomal protein L3
Chain K: 50S ribosomal protein L13
Chain R: 50S ribosomal protein L20
Chain T: 50S ribosomal protein L22

J8_6O8X_001