J8_6UO1_002
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
- Length
- 47 nucleotides
- Bulged bases
- 6UO1|1|1A|G|530, 6UO1|1|1A|C|2021, 6UO1|1|1A|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6UO1|1|1A|A|8
6UO1|1|1A|U|9
6UO1|1|1A|G|10
6UO1|1|1A|G|11
6UO1|1|1A|U|12
6UO1|1|1A|A|13
6UO1|1|1A|A|14
6UO1|1|1A|G|15
*
6UO1|1|1A|U|525
6UO1|1|1A|A|526
6UO1|1|1A|C|527
6UO1|1|1A|A|528
6UO1|1|1A|A|529
6UO1|1|1A|G|530
6UO1|1|1A|C|531
*
6UO1|1|1A|G|2018
6UO1|1|1A|A|2019
6UO1|1|1A|A|2020
6UO1|1|1A|C|2021
6UO1|1|1A|U|2022
6UO1|1|1A|G|2023
*
6UO1|1|1A|C|2040
6UO1|1|1A|U|2041
6UO1|1|1A|A|2042
6UO1|1|1A|C|2043
*
6UO1|1|1A|G|2625
6UO1|1|1A|C|2626
6UO1|1|1A|G|2627
6UO1|1|1A|C|2628
6UO1|1|1A|A|2629
6UO1|1|1A|G|2630
*
6UO1|1|1A|C|2788
6UO1|1|1A|C|2789
6UO1|1|1A|A|2790
6UO1|1|1A|C|2791
*
6UO1|1|1A|G|2805
6UO1|1|1A|G|2807
6UO1|1|1A|U|2808
6UO1|1|1A|A|2809
6UO1|1|1A|A|2810
6UO1|1|1A|G|2811
*
6UO1|1|1A|C|2889
6UO1|1|1A|G|2891
6UO1|1|1A|A|2892
6UO1|1|1A|G|2893
6UO1|1|1A|G|2894
6UO1|1|1A|U|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
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