3D structure

PDB id
6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length
47 nucleotides
Bulged bases
6UO1|1|1A|G|530, 6UO1|1|1A|C|2021, 6UO1|1|1A|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6UO1|1|1A|A|8
6UO1|1|1A|U|9
6UO1|1|1A|G|10
6UO1|1|1A|G|11
6UO1|1|1A|U|12
6UO1|1|1A|A|13
6UO1|1|1A|A|14
6UO1|1|1A|G|15
*
6UO1|1|1A|U|525
6UO1|1|1A|A|526
6UO1|1|1A|C|527
6UO1|1|1A|A|528
6UO1|1|1A|A|529
6UO1|1|1A|G|530
6UO1|1|1A|C|531
*
6UO1|1|1A|G|2018
6UO1|1|1A|A|2019
6UO1|1|1A|A|2020
6UO1|1|1A|C|2021
6UO1|1|1A|U|2022
6UO1|1|1A|G|2023
*
6UO1|1|1A|C|2040
6UO1|1|1A|U|2041
6UO1|1|1A|A|2042
6UO1|1|1A|C|2043
*
6UO1|1|1A|G|2625
6UO1|1|1A|C|2626
6UO1|1|1A|G|2627
6UO1|1|1A|C|2628
6UO1|1|1A|A|2629
6UO1|1|1A|G|2630
*
6UO1|1|1A|C|2788
6UO1|1|1A|C|2789
6UO1|1|1A|A|2790
6UO1|1|1A|C|2791
*
6UO1|1|1A|G|2805
6UO1|1|1A|G|2807
6UO1|1|1A|U|2808
6UO1|1|1A|A|2809
6UO1|1|1A|A|2810
6UO1|1|1A|G|2811
*
6UO1|1|1A|C|2889
6UO1|1|1A|G|2891
6UO1|1|1A|A|2892
6UO1|1|1A|G|2893
6UO1|1|1A|G|2894
6UO1|1|1A|U|2895

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13
Chain 1U
50S ribosomal protein L20
Chain 1W
50S ribosomal protein L22

Coloring options:

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