J8_6XQD_001
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
- Length
- 47 nucleotides
- Bulged bases
- 6XQD|1|1A|G|530, 6XQD|1|1A|C|2021, 6XQD|1|1A|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XQD|1|1A|A|8
6XQD|1|1A|U|9
6XQD|1|1A|G|10
6XQD|1|1A|G|11
6XQD|1|1A|U|12
6XQD|1|1A|A|13
6XQD|1|1A|A|14
6XQD|1|1A|G|15
*
6XQD|1|1A|U|525
6XQD|1|1A|A|526
6XQD|1|1A|C|527
6XQD|1|1A|A|528
6XQD|1|1A|A|529
6XQD|1|1A|G|530
6XQD|1|1A|C|531
*
6XQD|1|1A|G|2018
6XQD|1|1A|A|2019
6XQD|1|1A|A|2020
6XQD|1|1A|C|2021
6XQD|1|1A|U|2022
6XQD|1|1A|G|2023
*
6XQD|1|1A|C|2040
6XQD|1|1A|U|2041
6XQD|1|1A|A|2042
6XQD|1|1A|C|2043
*
6XQD|1|1A|G|2625
6XQD|1|1A|C|2626
6XQD|1|1A|G|2627
6XQD|1|1A|C|2628
6XQD|1|1A|A|2629
6XQD|1|1A|G|2630
*
6XQD|1|1A|C|2788
6XQD|1|1A|C|2789
6XQD|1|1A|A|2790
6XQD|1|1A|C|2791
*
6XQD|1|1A|G|2805
6XQD|1|1A|G|2807
6XQD|1|1A|U|2808
6XQD|1|1A|A|2809
6XQD|1|1A|A|2810
6XQD|1|1A|G|2811
*
6XQD|1|1A|C|2889
6XQD|1|1A|G|2891
6XQD|1|1A|A|2892
6XQD|1|1A|G|2893
6XQD|1|1A|G|2894
6XQD|1|1A|U|2895
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
Coloring options: