3D structure

PDB id
6XQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length
47 nucleotides
Bulged bases
6XQD|1|1A|G|530, 6XQD|1|1A|C|2021, 6XQD|1|1A|A|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XQD|1|1A|A|8
6XQD|1|1A|U|9
6XQD|1|1A|G|10
6XQD|1|1A|G|11
6XQD|1|1A|U|12
6XQD|1|1A|A|13
6XQD|1|1A|A|14
6XQD|1|1A|G|15
*
6XQD|1|1A|U|525
6XQD|1|1A|A|526
6XQD|1|1A|C|527
6XQD|1|1A|A|528
6XQD|1|1A|A|529
6XQD|1|1A|G|530
6XQD|1|1A|C|531
*
6XQD|1|1A|G|2018
6XQD|1|1A|A|2019
6XQD|1|1A|A|2020
6XQD|1|1A|C|2021
6XQD|1|1A|U|2022
6XQD|1|1A|G|2023
*
6XQD|1|1A|C|2040
6XQD|1|1A|U|2041
6XQD|1|1A|A|2042
6XQD|1|1A|C|2043
*
6XQD|1|1A|G|2625
6XQD|1|1A|C|2626
6XQD|1|1A|G|2627
6XQD|1|1A|C|2628
6XQD|1|1A|A|2629
6XQD|1|1A|G|2630
*
6XQD|1|1A|C|2788
6XQD|1|1A|C|2789
6XQD|1|1A|A|2790
6XQD|1|1A|C|2791
*
6XQD|1|1A|G|2805
6XQD|1|1A|G|2807
6XQD|1|1A|U|2808
6XQD|1|1A|A|2809
6XQD|1|1A|A|2810
6XQD|1|1A|G|2811
*
6XQD|1|1A|C|2889
6XQD|1|1A|G|2891
6XQD|1|1A|A|2892
6XQD|1|1A|G|2893
6XQD|1|1A|G|2894
6XQD|1|1A|U|2895

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13
Chain 1U
50S ribosomal protein L20
Chain 1W
50S ribosomal protein L22

Coloring options:

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