Loop J8_6XQE

3D structure

PDB id: 6XQE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 6XQE|1|1A|G|530, 6XQE|1|1A|C|2021, 6XQE|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6XQE|1|1A|A|8
6XQE|1|1A|U|9
6XQE|1|1A|G|10
6XQE|1|1A|G|11
6XQE|1|1A|U|12
6XQE|1|1A|A|13
6XQE|1|1A|A|14
6XQE|1|1A|G|15
*
6XQE|1|1A|U|525
6XQE|1|1A|A|526
6XQE|1|1A|C|527
6XQE|1|1A|A|528
6XQE|1|1A|A|529
6XQE|1|1A|G|530
6XQE|1|1A|C|531
*
6XQE|1|1A|G|2018
6XQE|1|1A|A|2019
6XQE|1|1A|A|2020
6XQE|1|1A|C|2021
6XQE|1|1A|U|2022
6XQE|1|1A|G|2023
*
6XQE|1|1A|C|2040
6XQE|1|1A|U|2041
6XQE|1|1A|A|2042
6XQE|1|1A|C|2043
*
6XQE|1|1A|G|2625
6XQE|1|1A|C|2626
6XQE|1|1A|G|2627
6XQE|1|1A|C|2628
6XQE|1|1A|A|2629
6XQE|1|1A|G|2630
*
6XQE|1|1A|C|2788
6XQE|1|1A|C|2789
6XQE|1|1A|A|2790
6XQE|1|1A|C|2791
*
6XQE|1|1A|G|2805
6XQE|1|1A|G|2807
6XQE|1|1A|U|2808
6XQE|1|1A|A|2809
6XQE|1|1A|A|2810
6XQE|1|1A|G|2811
*
6XQE|1|1A|C|2889
6XQE|1|1A|G|2891
6XQE|1|1A|A|2892
6XQE|1|1A|G|2893
6XQE|1|1A|G|2894
6XQE|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_6XQE_001