Loop J8_6XYW

3D structure

PDB id: 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the plant mitochondrial ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å

Loop

Sequence: GAAGGAAG*CGAUC*GUAUC*GACUUUGAAAAC*GGAAGGGAAAU*AGACCC*GAUUUG*CUAAGUAUUCC
Length: 64 nucleotides
Bulged bases: 6XYW|1|1|U|161, 6XYW|1|1|U|162, 6XYW|1|1|A|208
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6XYW|1|1|G|46
6XYW|1|1|A|47
6XYW|1|1|A|48
6XYW|1|1|G|49
6XYW|1|1|G|50
6XYW|1|1|A|51
6XYW|1|1|A|52
6XYW|1|1|G|53
*
6XYW|1|1|C|110
6XYW|1|1|G|111
6XYW|1|1|A|112
6XYW|1|1|U|113
6XYW|1|1|C|114
*
6XYW|1|1|G|123
6XYW|1|1|U|124
6XYW|1|1|A|125
6XYW|1|1|U|126
6XYW|1|1|C|127
*
6XYW|1|1|G|157
6XYW|1|1|A|158
6XYW|1|1|C|159
6XYW|1|1|U|160
6XYW|1|1|U|161
6XYW|1|1|U|162
6XYW|1|1|G|163
6XYW|1|1|A|164
6XYW|1|1|A|165
6XYW|1|1|A|166
6XYW|1|1|A|167
6XYW|1|1|C|168
*
6XYW|1|1|G|199
6XYW|1|1|G|200
6XYW|1|1|A|201
6XYW|1|1|A|202
6XYW|1|1|G|203
6XYW|1|1|G|204
6XYW|1|1|G|205
6XYW|1|1|A|206
6XYW|1|1|A|207
6XYW|1|1|A|208
6XYW|1|1|U|209
*
6XYW|1|1|A|216
6XYW|1|1|G|217
6XYW|1|1|A|218
6XYW|1|1|C|219
6XYW|1|1|C|220
6XYW|1|1|C|221
*
6XYW|1|1|G|246
6XYW|1|1|A|247
6XYW|1|1|U|248
6XYW|1|1|U|249
6XYW|1|1|U|250
6XYW|1|1|G|251
*
6XYW|1|1|C|567
6XYW|1|1|U|568
6XYW|1|1|A|569
6XYW|1|1|A|570
6XYW|1|1|G|571
6XYW|1|1|U|572
6XYW|1|1|A|573
6XYW|1|1|U|574
6XYW|1|1|U|575
6XYW|1|1|C|576
6XYW|1|1|C|577

Current chains

Chain 1: RNA (2842-MER)

Nearby chains

Chain AG: At5g40080
Chain AK: At4g22000
Chain AQ: Pentatricopeptide repeat-containing protein PNM1, mitochondrial
Chain Al: Ribosomal protein L18e/L15 superfamily protein

J8_6XYW_001