Loop J8_7MD7

3D structure

PDB id: 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.8 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 7MD7|1|1A|G|530, 7MD7|1|1A|C|2021, 7MD7|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7MD7|1|1A|A|8
7MD7|1|1A|U|9
7MD7|1|1A|G|10
7MD7|1|1A|G|11
7MD7|1|1A|U|12
7MD7|1|1A|A|13
7MD7|1|1A|A|14
7MD7|1|1A|G|15
*
7MD7|1|1A|U|525
7MD7|1|1A|A|526
7MD7|1|1A|C|527
7MD7|1|1A|A|528
7MD7|1|1A|A|529
7MD7|1|1A|G|530
7MD7|1|1A|C|531
*
7MD7|1|1A|G|2018
7MD7|1|1A|A|2019
7MD7|1|1A|A|2020
7MD7|1|1A|C|2021
7MD7|1|1A|U|2022
7MD7|1|1A|G|2023
*
7MD7|1|1A|C|2040
7MD7|1|1A|U|2041
7MD7|1|1A|A|2042
7MD7|1|1A|C|2043
*
7MD7|1|1A|G|2625
7MD7|1|1A|C|2626
7MD7|1|1A|G|2627
7MD7|1|1A|C|2628
7MD7|1|1A|A|2629
7MD7|1|1A|G|2630
*
7MD7|1|1A|C|2788
7MD7|1|1A|C|2789
7MD7|1|1A|A|2790
7MD7|1|1A|C|2791
*
7MD7|1|1A|G|2805
7MD7|1|1A|G|2807
7MD7|1|1A|U|2808
7MD7|1|1A|A|2809
7MD7|1|1A|A|2810
7MD7|1|1A|G|2811
*
7MD7|1|1A|C|2889
7MD7|1|1A|G|2891
7MD7|1|1A|A|2892
7MD7|1|1A|G|2893
7MD7|1|1A|G|2894
7MD7|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_7MD7_001