Loop J8_7Y41

3D structure

PDB id: 7Y41 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

Loop

Sequence: UGUUUAAG*UACAAUC*GCACUA*UUAC*GCGUCA*UCAC*GAUAAG*CGAAAA
Length: 47 nucleotides
Bulged bases: 7Y41|1|A|U|617, 7Y41|1|A|C|2245, 7Y41|1|A|C|2853
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7Y41|1|A|U|5
7Y41|1|A|G|6
7Y41|1|A|U|7
7Y41|1|A|U|8
7Y41|1|A|U|9
7Y41|1|A|A|10
7Y41|1|A|A|11
7Y41|1|A|G|12
*
7Y41|1|A|U|612
7Y41|1|A|A|613
7Y41|1|A|C|614
7Y41|1|A|A|615
7Y41|1|A|A|616
7Y41|1|A|U|617
7Y41|1|A|C|618
*
7Y41|1|A|G|2242
7Y41|1|A|C|2243
7Y41|1|A|A|2244
7Y41|1|A|C|2245
7Y41|1|A|U|2246
7Y41|1|A|A|2247
*
7Y41|1|A|U|2264
7Y41|1|A|U|2265
7Y41|1|A|A|2266
7Y41|1|A|C|2267
*
7Y41|1|A|G|2849
7Y41|1|A|C|2850
7Y41|1|A|G|2851
7Y41|1|A|U|2852
7Y41|1|A|C|2853
7Y41|1|A|A|2854
*
7Y41|1|A|U|3012
7Y41|1|A|C|3013
7Y41|1|A|A|3014
7Y41|1|A|C|3015
*
7Y41|1|A|G|3027
7Y41|1|A|A|3028
7Y41|1|A|U|3029
7Y41|1|A|A|3030
7Y41|1|A|A|3031
7Y41|1|A|G|3032
*
7Y41|1|A|C|3110
7Y41|1|A|G|3111
7Y41|1|A|A|3112
7Y41|1|A|A|3113
7Y41|1|A|A|3114
7Y41|1|A|A|3115

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain D: 50S ribosomal protein L3
Chain K: 50S ribosomal protein L13
Chain R: 50S ribosomal protein L20
Chain T: 50S ribosomal protein L22
Chain b: 50S ribosomal protein L32

J8_7Y41_001