Loop J8_8CVJ

3D structure

PDB id: 8CVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU
Length: 47 nucleotides
Bulged bases: 8CVJ|1|1A|G|530, 8CVJ|1|1A|C|2021, 8CVJ|1|1A|A|2790
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8CVJ|1|1A|A|8
8CVJ|1|1A|U|9
8CVJ|1|1A|G|10
8CVJ|1|1A|G|11
8CVJ|1|1A|U|12
8CVJ|1|1A|A|13
8CVJ|1|1A|A|14
8CVJ|1|1A|G|15
*
8CVJ|1|1A|U|525
8CVJ|1|1A|A|526
8CVJ|1|1A|C|527
8CVJ|1|1A|A|528
8CVJ|1|1A|A|529
8CVJ|1|1A|G|530
8CVJ|1|1A|C|531
*
8CVJ|1|1A|G|2018
8CVJ|1|1A|A|2019
8CVJ|1|1A|A|2020
8CVJ|1|1A|C|2021
8CVJ|1|1A|U|2022
8CVJ|1|1A|G|2023
*
8CVJ|1|1A|C|2040
8CVJ|1|1A|U|2041
8CVJ|1|1A|A|2042
8CVJ|1|1A|C|2043
*
8CVJ|1|1A|G|2625
8CVJ|1|1A|C|2626
8CVJ|1|1A|G|2627
8CVJ|1|1A|C|2628
8CVJ|1|1A|A|2629
8CVJ|1|1A|G|2630
*
8CVJ|1|1A|C|2788
8CVJ|1|1A|C|2789
8CVJ|1|1A|A|2790
8CVJ|1|1A|C|2791
*
8CVJ|1|1A|G|2805
8CVJ|1|1A|G|2807
8CVJ|1|1A|U|2808
8CVJ|1|1A|A|2809
8CVJ|1|1A|A|2810
8CVJ|1|1A|G|2811
*
8CVJ|1|1A|C|2889
8CVJ|1|1A|G|2891
8CVJ|1|1A|A|2892
8CVJ|1|1A|G|2893
8CVJ|1|1A|G|2894
8CVJ|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J8_8CVJ_001